Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1106 ATGGGGGATGTGAAGGACAAGGTTAAGGGCTTCATGAAGCGCTTTAACAATTCGTTTTCCTCATCTTCGTCTGCAAGTTTCAAGGGTCAGGGAAGAGTTTTAGGGTCCTCTTCTTCCGGGTCGGCTACTTCTTTGCCCACCCGCCCATCGCAGAACCCAATTTCAAATCCCCCTTCAGATTCCCCGGTAAGTTCTAAGCTCCCTGTTGCGAATTCAATTCCCACTGCTGAAGTTAGGTCACAACAGCCGAATAAATCGAACCCAGATCGTAAACCGGCTGATGGGTTTGACCCATTTGATTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCGGAGTTACGCCTCTGAAGAAGAGGTTTCGGTCCATGTGGATACCTGTGTTAATGATAATACAGATCTGTCTGCGAATGATGTTGAATCTCGGACTGAATTGGAGGGTTGTGTTGCCAATTTCTTGTCTGGGAAACCATCTCAAGGTTCGTTGGAAATTGTTCTGAAGCTTTTGAGGAATGTAGTTCGGGAACCGGAGAATTCGAAGTTTAGGAAGATTCGTTTGAGCAATCCCAGGATTAAGGAGGCAATTGGTGAGGCTGTAGGGGGAGTGGAATTGTTGGAGTTTGTAGGGTTTAAATTGCAAGAGGATGAGGGTGAAATGTGGGCAACAATGGAAGTTCCAACAGAGGAAGAGATTAATGTATTGAGTAAGGTAATAGGTTCAATTGATCAGCCAAAGCTTGATGAACAGCAAAAGAAAGGCAGCACTTCATCTATGGATTCGGCTCAGGTTGTTGAATTGATTAAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCACACATTGAACTACCAGACTCCTTCTACAGCCTATCAATTGAAGATGTAAAAAGGGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGATTCCAAAATCTTACAAAGAAAAACAGGCCAAAGCTGGTAGGAAAAAGTACACTAGAACAGTCATCAGAATTCAGTTTCCTGATGGCGTGGTACTTCAAGGTGTTTTTTCGCCTCGGGAACCAACAACTTCTCTATATGAGAAATTATGCTTGGATAAACATAACAAGTGA 1173 42.97 MGDVKDKVKGFMKRFNNSFSSSSSASFKGQGRVLGSSSSGSATSLPTRPSQNPISNPPSDSPVSSKLPVANSIPTAEVRSQQPNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYASEEEVSVHVDTCVNDNTDLSANDVESRTELEGCVANFLSGKPSQGSLEIVLKLLRNVVREPENSKFRKIRLSNPRIKEAIGEAVGGVELLEFVGFKLQEDEGEMWATMEVPTEEEINVLSKVIGSIDQPKLDEQQKKGSTSSMDSAQVVELIKPKKVDRQIRVFFAVPENVAAHIELPDSFYSLSIEDVKREAIMRKQKIAESQLLIPKSYKEKQAKAGRKKYTRTVIRIQFPDGVVLQGVFSPREPTTSLYEKLCLDKHNK 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6774097 6777612 + Sed0013468.2 Sed03g1106 706593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1106 390 MobiDBLite consensus disorder prediction 57 88 - -
Sed03g1106 390 MobiDBLite consensus disorder prediction 15 50 - -
Sed03g1106 390 CDD PUB 162 233 - -
Sed03g1106 390 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 382 - GO:0050832(PANTHER)
Sed03g1106 390 MobiDBLite consensus disorder prediction 15 99 - -
Sed03g1106 390 Gene3D - 167 256 - -
Sed03g1106 390 SUPERFAMILY PUG domain-like 170 234 IPR036339 -
Sed03g1106 390 Pfam PUB domain 172 244 IPR018997 -
Sed03g1106 390 SMART PGNneu 173 240 - -
Sed03g1106 390 SUPERFAMILY Ubiquitin-like 321 383 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1106 Sed-Chr3:6774097 Sed11g1683 Sed-Chr11:32076447 2.00E-125 dispersed
Sed03g1105 Sed-Chr3:6774097 Sed03g1106 Sed-Chr3:6774097 2.50E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37816 PF09409 PUB 3.50E-16 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1106 K14011 - csv:101209321 588.186