Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1115 ATGAAAAGGGAGCATCATCATCTTCATCCTCGTCCGGAGCCGCCTTCCGTGGCTGCCGCCGCCGCCTCTAATGGAAAGGCTAAGCTCTGGGAAGAGGAGGCTCAGCTCGACGGAGGAACGGACGAGCTTCTTGCTGTGTTGGGCTACAAGGTTAAGTCGTCGGACATGGCGGACGTTGCTCTCAAGATCGAACAACTCGATGCGTTGTGTCAAGTTCAGGATACTGGTCTTTCGCATCTAGCTCTCGACACCGTTCATTATAATCCCTCCGATCTCTCCACTTGGCTTGAATCTATGCTCACCGAACTCCATCCCCTACAGTTGGACCATTCCATCGATTACGATCCTCAACGCCAAACTTCTACTCCTGATTACGACCTTCAAGCTATTACCAGCAGCGTGATTCATCCGCCTCGAGAGAACAAGCGTTTCAAACCTTCTTCCGATTCAGACCCCGATTTGTTCTCCACCACCGCGATTTGCGCCTCCGATTCTGCGACTCGCTCTGTTGTCCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTTCATGCTTTGATGGCCTGTGCCGAAGCCGTACAGCTTAACGATCTGAATCTGGCAGAGGCTCTCGTGAAGCGAATCGGCAGCTTGGCGGTTTCTCAAGCCGGAGCGATGCGGAAGGTCGCCACGTTCTTCGCCGAAGCATTGGCCCGCCGAATCTACAGAGTCTGCCCTGAAAATCCGATCGATCATTCAATGTCGAATTTCCTTCAGATGCATTTCTACGAGAGCTGTCCGTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTGGAAGCTGTGGAAGGGAAGAATCGTGTTCATGTAATCGATTTCTCGATGAATCAAGGAATGCAATGGCCGGCTCTGATGCAAGCCCTAGCTCTCCGGCCGAGTGGTCCCCCAACCTTCCGGCTCACCGGGATCGGACCTCCGGCGTCTGATAACTCCGATTACCTCCAAGAAGTCGGCTGGAAGCTCGCTAAATTGGCCGAATCCATCCATTTGGACTTTGAATACAGAGGATTCGTCGCCAGTAGCTTGGCGGATCTGGACGCGTCGATGCTTGAGCTCCGGCCGAGCGAAGTGGAATCGGTGGTGGTTAACTCGGTGTTCGAGCTGCATAAGCTACTGGCTCGGCCGGGCGCCATGGATAAGGTTCTATCCGTGGTGAAGCAGATGAAGCCAGAGATCATGACCGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCGCTCCATTACTACTCGACGCTTTTTGACTCGTTGGAGGGATCGCCCAACAACCAGGACAAGATCATGTCCGAAATGTACCTTGGGAAGCAAATTTGCAACGTGGTGGCCTGTGAAGGTGCCGACCGGGTCGAGCGCCACGAGACCCTCGCTCAGTGGCGAACTCGATTGTCGTCGGCTGCATTCGAGCCAATTCACCTTGGCTCGAACGCATTCAAGCAAGCGAGCATACTCCTCGCTCACGGTGGCAGCGGAGACGGATATCGGGTGGAAGAAAACCAAGGGTCGCTTACGCTTGGGTGGCACACACGCCCCCTCATCGCCTCCTCGGCCTGGAAACTCGGGTTCAAACCGGTGGCAGCTCACTGA 1653 54.57 MKREHHHLHPRPEPPSVAAAAASNGKAKLWEEEAQLDGGTDELLAVLGYKVKSSDMADVALKIEQLDALCQVQDTGLSHLALDTVHYNPSDLSTWLESMLTELHPLQLDHSIDYDPQRQTSTPDYDLQAITSSVIHPPRENKRFKPSSDSDPDLFSTTAICASDSATRSVVLVDSQENGIQLVHALMACAEAVQLNDLNLAEALVKRIGSLAVSQAGAMRKVATFFAEALARRIYRVCPENPIDHSMSNFLQMHFYESCPYLKFAHFTANQAILEAVEGKNRVHVIDFSMNQGMQWPALMQALALRPSGPPTFRLTGIGPPASDNSDYLQEVGWKLAKLAESIHLDFEYRGFVASSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAMDKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLAQWRTRLSSAAFEPIHLGSNAFKQASILLAHGGSGDGYRVEENQGSLTLGWHTRPLIASSAWKLGFKPVAAH 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6875616 6877958 + Sed0005795.1 Sed03g1115 706602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1115 550 Pfam GRAS domain family 182 541 IPR005202 -
Sed03g1115 550 MobiDBLite consensus disorder prediction 1 20 - -
Sed03g1115 550 Gene3D - 39 103 IPR038088 -
Sed03g1115 550 FunFam DELLA protein GAI 39 103 - -
Sed03g1115 550 ProSiteProfiles GRAS family profile. 173 541 IPR005202 -
Sed03g1115 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 162 540 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Sed03g1115 550 Pfam Transcriptional regulator DELLA protein N terminal 41 106 IPR021914 -
Sed03g1115 550 SMART DELLA_2 41 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2998 Sed-Chr1:29728891 Sed03g1115 Sed-Chr3:6875616 4.70E-160 dispersed
Sed03g1115 Sed-Chr3:6875616 Sed05g2687 Sed-Chr5:38266944 4.20E-161 dispersed
Sed03g1115 Sed-Chr3:6875616 Sed01g0551 Sed-Chr1:4124622 6.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37817 PF03514 GRAS 1.10E-132 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1115 K14494 - csv:101204164 892.878