Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1116 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGAGTTAATCTCGCTGTTCGTGATACTCGTAGCAGCGATCCTTATGTCCTAATCACAATGGGCAACCAGCGTTTGAAAACCCGTGTGGTGAAAAACAATTGCAATCCTGAATGGAATGAAGAGTTGACTCTCTCAATTGCACATCTCCGGACTCCAATCGGTTTATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCAAGATCGACATCGAACCATACGTAGAGTGTTTGAAGATGGGACTGCAAAGCCTCCCAGATGGGTGTGTGGTTAAAAGAATATACCCAAACATAACAAACTATTTAGCTGATGAGAGCCAATGTGTTTGGAGGAAGGGGAAAATTGTACAGAACATGTGCCTCAGGTTGAAGAATGTAGAGTGTGGTGAGGTTGCGATTCAGATCGAATGGATCGATGTTCCTGGTGCCAAGGGTCTGCCGAGAGAGGGTACGAGCTACTTCTGA 522 45.79 MEHFLGLLRIRVLRGVNLAVRDTRSSDPYVLITMGNQRLKTRVVKNNCNPEWNEELTLSIAHLRTPIGLSVYDKDTLTDHDKMGDAKIDIEPYVECLKMGLQSLPDGCVVKRIYPNITNYLADESQCVWRKGKIVQNMCLRLKNVECGEVAIQIEWIDVPGAKGLPREGTSYF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6882830 6884719 - Sed0015137.1 Sed03g1116 706603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1116 173 Gene3D C2 domain 4 168 IPR035892 -
Sed03g1116 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Sed03g1116 173 CDD C2_ArfGAP 5 148 - -
Sed03g1116 173 Pfam C2 domain 6 92 IPR000008 -
Sed03g1116 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Sed03g1116 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Sed03g1116 173 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1116 Sed-Chr3:6882830 Sed11g1445 Sed-Chr11:30266181 1.10E-78 dispersed
Sed11g1444 Sed-Chr11:30266181 Sed03g1116 Sed-Chr3:6882830 8.70E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1116 - - - 0.0