Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1130 ATGTCCCTTCATCTCTGTAATCCACTTCCAATACTACCCTGCCGGAATGGATACCGGACAGAACCTCCGCCGCCGGCGCTGAAGTCGATGAACTTCTGCTCCGCTATCAACCGCTACTCCGCCGGATGTAAAAGGCAGTACACGAGTGTGATGATAGTCCCGACGGGCGTAGGCGCCGCCATTGGTGGATATGCAGGTGATGCTCTGCCGGTTGCTCGCGCTCTCGCCTCCGTCGTTGATTGCCTTATCACTCACCCTAACGTGCTTAATGCAGCAATGCTTTACTGGCCGATGAACAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTTATGGGCCCTGGAACCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATTGAGGAAAAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAATATATTGTCACAGAGACACCATTAATGGTTGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATTAGGCACCCTGCCTCATTGCTGAGATCTGTGCAGACGTTAATGAATCAATCCAAGGTGAATGCAGTAGCGGTTGTTGGACGATTCCCAGATGACGATGTTGAAGAGACGGATAATTATCGGCAAGGGATGGGAGTTGATACTTTAGCAGGGGTTGAGGCTATTATTAGCCACCTCGTAGTGAAGGAGTTCCAAATTCCATGTGCTCATGCTCCAGCTTTATCACCTAGTCCCTTGTGCAAATCTCTATCTCCAAAATCAGCAGCCGAGGAGTTGGGATATACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTAAGCAAGGGTTCTGAATCTTTGGGGAAGGACTGCATATTAGCCGATGACGTCGATAGTGTCATTCTACCTATAGATGCCTGTGGAGGGGATGGCGCTCTTGCTTTTGCCAGAAGCAAACACAAGCCGCTTATTATTGCAGTCGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGACTCACTTGGAATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTATTGCAGCTCACAAGGCAGGAATAGACCCCTACTCCCTGCGGAGAAATAGACTCCACAGCATTAAGAGCATTACAACTACATCTCCTAATGGTTACGTAGTTTCAAGATCTATTGTAGTCACCAACAAAACTCGGTTACACTTTGTAGCTATTCTACAGAAATTAAAATTACACATAGCATACGTGGCAATGATGAGCAGCGAGGTCGTCGGCGAAGGCCGGCAGCGTGCCTTGGCTCTGCAACTTCTTGACCTTGTACGTGACTTTGTTCTGATGTCAGGAAGGTCCATCGCCGGCTCGAGAGACGTCATGAAAAAGGATTCCACGGATCTCATCCGTCGGATTGCTCTCCTGAATCATCTGGCGGAGGAGATCACTAACTTCTGCGGCAGCGGTGGCGGTGGCGGTGGCGATAATTTTGAGGGATTGAATGAGTCTGGTTCTTCTTCTTCGTCTTCTGTGGATTGCCTTTCGGAGGTGGTGGGAGCAATTCAGGCGGCCAAGCGCCTTCTTTATGCTGCTTTGACTTTCTCTGGAATGGAGGACGAGGTTTCTGCAACATTGACTGATGGAGCTCCCAAAAATTTGGTTCTTCAATTCCAGTACGTGACAACCAGATTGGAACTTGCACTTTCTAATCTGCCATTCGATCACTTTTGTGTCTCAGATGAAGTTCAAGAACAGGTTGATTTGGTTACAGCCCAGTTAAGAAGAGCATCAAATAAGTATGAGTCTATGTCTAAACCTGCAGAAAAGAAGCTTGAAGCTCAAAGGTCAGTAAAATGGATGATAAACAATGATGTCAAAAGCATGTCTAGTGTTGCGAATTCAGATGGAGAGTCTCAGCATCGTCCCCAGAACAGCAATGATTGGACCAGTTTCGATTCGGTGGAAATGAAGAACTCGAATTCATGTTTCGATGAGTGTTCAAGCGTTGTTAATAATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGAAACTGATATTCCTGAGAACTTCTTGTGCCCCATTTCCTATGAATTGATGATAGATCCTGTCATCGTCTCGACCGGACAGACATATGAGAGATCCAACATACAAGACTGGATAGAGGGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGGTCTAAACCCCACTCCAAATTTTCTAATGAAAAAACTGATCTATGAATGGTGTCAACAACACAATGTCAAGCTAGAGGAAGGATTAACTAACAGGAATCTTAGGAAGTATAGATCGTTCGAAGACGGCTTCCAGAAGACTCTGTCGATAAAAACTCTGGTGCAACACCTCTCTCTCGGGTCGGTTCAAGAGCAGAAGGTAGCCGTGACCGAGATCCGTAAGCTATCAAAAAGCAGCTCGGATCACAGAGCTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCAAACACAAGAGAATGCAATTTCTTGCATTCTCAATCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCTTACATTTCCCAAGTCCTCAAAACTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCGTTAGCCGATGAGAACAAGGCGGTAATCGGAGCTTCGGGCGTGATCACGGATCTGTTGAAAATCCTCGAGACCGGGACCTTGAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATATACCAAGGGAACAAGGGCAGGGCTTTCAGGGCTGGGATTATTAAACCATTGCTGAAAATGCTCTCTGATTCAAATGGCTCCTTGGTTGATGAAGCTCTGTATATAATGTCAGTTCTTTGCAGCCATCCCGAGGCGAAGGCAGCGATGGCGAATGCGAATTCATTGCTCGTTTTGACCGACGTTCTGAAGACGGGGCTAGAGCGAAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAGTGGTTAAACAGGCTTGGTGCAGCGGTCCCGTTGATGAAACTTGCCGAGAGCGGCACAGGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAGCAACTCAGAAAATCATGA 3240 46.79 MSLHLCNPLPILPCRNGYRTEPPPPALKSMNFCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMNNVLYVEGYALDRFAEGLWALEPVHQNRVGLVLDAGIEEKLRIRHLQVADAARASLGLPVMEYIVTETPLMVEKWIDPKTGQSTGRIRHPASLLRSVQTLMNQSKVNAVAVVGRFPDDDVEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPSPLCKSLSPKSAAEELGYTFLPCVLSGLSNAPQYLSKGSESLGKDCILADDVDSVILPIDACGGDGALAFARSKHKPLIIAVEENETVLSDSPDSLGIEAVKVSNYWEAIGVIAAHKAGIDPYSLRRNRLHSIKSITTTSPNGYVVSRSIVVTNKTRLHFVAILQKLKLHIAYVAMMSSEVVGEGRQRALALQLLDLVRDFVLMSGRSIAGSRDVMKKDSTDLIRRIALLNHLAEEITNFCGSGGGGGGDNFEGLNESGSSSSSSVDCLSEVVGAIQAAKRLLYAALTFSGMEDEVSATLTDGAPKNLVLQFQYVTTRLELALSNLPFDHFCVSDEVQEQVDLVTAQLRRASNKYESMSKPAEKKLEAQRSVKWMINNDVKSMSSVANSDGESQHRPQNSNDWTSFDSVEMKNSNSCFDECSSVVNNSDMEDVLASKSQDETDIPENFLCPISYELMIDPVIVSTGQTYERSNIQDWIEGGNTTCPKTQEQLQGLNPTPNFLMKKLIYEWCQQHNVKLEEGLTNRNLRKYRSFEDGFQKTLSIKTLVQHLSLGSVQEQKVAVTEIRKLSKSSSDHRAEIAEAGAIPQLVNLLTSEDVQTQENAISCILNLSLHEQNKRLVMLSGAVSYISQVLKTGSMEGRECAAATIYSLSLADENKAVIGASGVITDLLKILETGTLRGQKDAAGALLNLCIYQGNKGRAFRAGIIKPLLKMLSDSNGSLVDEALYIMSVLCSHPEAKAAMANANSLLVLTDVLKTGLERSKENAAAVLLALCKGDWEKLEWLNRLGAAVPLMKLAESGTGRARRKAASLLEQLRKS 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7029722 7040663 + Sed0008286.1 Sed03g1130 706617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1130 1079 SUPERFAMILY RING/U-box 697 777 - -
Sed03g1130 1079 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 843 885 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 CDD RING-Ubox_PUB 705 752 IPR045210 -
Sed03g1130 1079 SMART Ubox_2 707 770 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1130 1079 PANTHER OS01G0127400 PROTEIN 33 409 IPR021763 -
Sed03g1130 1079 Pfam Protein of unknown function (DUF3326) 48 386 IPR021763 -
Sed03g1130 1079 Gene3D - 959 1079 IPR011989 -
Sed03g1130 1079 FunFam RING-type E3 ubiquitin transferase 789 1079 - -
Sed03g1130 1079 Gene3D - 797 958 IPR011989 -
Sed03g1130 1079 SUPERFAMILY ARM repeat 802 1076 IPR016024 -
Sed03g1130 1079 ProSiteProfiles U-box domain profile. 703 777 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1130 1079 MobiDBLite consensus disorder prediction 645 666 - -
Sed03g1130 1079 Coils Coil 594 614 - -
Sed03g1130 1079 Pfam Armadillo/beta-catenin-like repeat 832 871 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 Pfam U-box domain 704 775 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g1130 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 786 IPR013083 -
Sed03g1130 1079 SMART arm_5 914 954 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 SMART arm_5 832 872 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 SMART arm_5 955 995 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 SMART arm_5 873 913 IPR000225 GO:0005515(InterPro)
Sed03g1130 1079 SMART arm_5 996 1036 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1130 Sed-Chr3:7029722 Sed04g3043 Sed-Chr4:41531483 4.60E-87 dispersed
Sed11g1664 Sed-Chr11:31926072 Sed03g1130 Sed-Chr3:7029722 1.40E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1130 - - - 0.0