Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1162 ATGAGTGCCGGTGCCGGTGGCGCTTCTCGAAGCACTAGGGATTTGATCTGCAACGCTGGTTCCGGTGCTGCTGCAGGTGCTATTGCAGCCACGTTCGTTTGCCCTTTGGATGTGATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTGTCACTAGTCTACAAAACATAATCCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGCCTGTCACCAACAATAGTAGCACTTCTTCCAAATTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGACGATGGCCATCAACTTTCATTTGGGAGGAATATGGTTGCTGCTGCAGGCGCTGGGGCATCTACTGCCATTACAACAAATCCTGTGTGGGTTGTCAAGACCAGACTCCAAACGCAGGGAATGAGGCCGGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACATGAAGAAGGAATCCGTGGGCTTTACAGTGGTGTCATCCCTTCGTTGCTTGGGATAAGTCATGTTGCAATTCAATTTCCTGCTTACGAAAAGCTCAAATCGTATATGGCAGCAAGAGATAACACAACCGTTGAAAAGCTAAGTCCAGGAAGTTTGGCTATTGCCTCCTCATTGTCGAAAGTTACAGCCTCGGTATCTACTTACCCGCATGAGGTAATTCGTTCCCGGCTGCAAGAGCAAGGCCAAGCCAGAAGTGTTGCTCCTCAATATGCAGGCGTAATAGACTGTATCAAAAAGGTTTTCCAAAAGGAAGGTTTACGCGGTTTTTATAGGGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCTGCTGTAATAACTTTCACCAGCTATGAGATGATACATAGGTTCCTACTACTGCAAGCTATACCGCCAGACAAGAAATATTCAGGAACTCATCCGAATTCAGATAGCCACGTGACGTCCCAAATGACGAGCAGAGACAACTCAACAGAAGATTGCGATTCCAGCATAAAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTATGGGGAACAAAGAACAGTTAACATCTAGACACTGA 1110 46.4 MSAGAGGASRSTRDLICNAGSGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIVTSLQNIIRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDDGHQLSFGRNMVAAAGAGASTAITTNPVWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIHEEGIRGLYSGVIPSLLGISHVAIQFPAYEKLKSYMAARDNTTVEKLSPGSLAIASSLSKVTASVSTYPHEVIRSRLQEQGQARSVAPQYAGVIDCIKKVFQKEGLRGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLLQAIPPDKKYSGTHPNSDSHVTSQMTSRDNSTEDCDSSIKQSQSQPSKQTRIPMGNKEQLTSRH 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7204832 7209311 - Sed0018906.1 Sed03g1162 706649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1162 369 SUPERFAMILY Mitochondrial carrier 14 299 IPR023395 -
Sed03g1162 369 Gene3D Mitochondrial carrier domain 109 308 IPR023395 -
Sed03g1162 369 Gene3D Mitochondrial carrier domain 4 108 IPR023395 -
Sed03g1162 369 MobiDBLite consensus disorder prediction 320 369 - -
Sed03g1162 369 Pfam Mitochondrial carrier protein 213 305 IPR018108 -
Sed03g1162 369 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Sed03g1162 369 Pfam Mitochondrial carrier protein 112 203 IPR018108 -
Sed03g1162 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Sed03g1162 369 MobiDBLite consensus disorder prediction 315 369 - -
Sed03g1162 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Sed03g1162 369 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085(InterPro)
Sed03g1162 369 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085(InterPro)
Sed03g1162 369 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085(InterPro)
Sed03g1162 369 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085(InterPro)
Sed03g1162 369 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085(InterPro)
Sed03g1162 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Sed03g1162 369 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 14 304 - -
Sed03g1162 369 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 314 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1162 Sed-Chr3:7204832 Sed07g0557 Sed-Chr7:4209566 2.60E-114 dispersed
Sed03g1162 Sed-Chr3:7204832 Sed03g1163 Sed-Chr3:7204832 1.10E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1162 K15115 - csv:101216902 607.831