Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1171 ATGATTTACTCCCACAAAATTCAAGAAATCTCAGCCAAAATGGGCTTCTCTTTGCTCGATTTCGCAGCCGCTTTGGATCAGGAACGCACCAAAGTTCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTTACCCATGCGATTGATTGTTGCAGGACTCAGTCATCGGAGACGACGACGACGGAGAATCCGCTATCGGAGTGTTCAGAGCAGACTTCCACCGAGATGGGTCCGGTTCTTGAGGAGTTTATTCCGATGAACAGAAATGGGGTTGCGGATTTTGAAGCTCAAACGGAGAAGATCGACGCCTCTGAACCGGATAATTTGAATTTGGCCCCGTCGGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCTCTGAATCTGGGCTCGCCGGAGAAGACGGCCATTGTTGAGATACAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAACCCGGTGGCGGAGGGACGCCGTCGTCTTCCGGTCCGGCTCCGACGGCTGCGACTAGCTCGACCGGGTCCGGTGGAACCAACCGACGGGAAGAGAAGGAGGCGCAAAATCAGAGGAAACAGAGACGGTGTTGGTCGCCGGAGCTTCACCGGCGATTCCTTCATGCGCTTCAACAGCTCGGCGGTGCTCATGTGGCGACGCCGAAGCAAATCAGAGAATTGATGAAAGTGGATAGTCTTACCAACGATGAAGTGAAAAGTCATTTACAGAAATATCGTCTCCACACAAGACGGCCAAGTTCGACGATGCAGAGCAATGGCAGCACCCAGGCGGCGCAGTTCCTGGTAGTGGGCGGCATTTGGGTACCGGCGGCGGAGTACGCCACCACAGCCACCACCAACGGTGTTTATGCACCGGTGGTTGGGGCGGCGCCACCGCAACCATTACCATTACCCGCCACCGTCCAAAAACCCAAGCCCAAGCATGCTACCGCCGCCGTTGAATGCAATTCTCCTACTGCATCTTCCTCTACTCATACATCTTCAATTTCACCAGCTTCTTAG 1044 54.12 MIYSHKIQEISAKMGFSLLDFAAALDQERTKVLMFQRELPLCLELVTHAIDCCRTQSSETTTTENPLSECSEQTSTEMGPVLEEFIPMNRNGVADFEAQTEKIDASEPDNLNLAPSDWLRSAQLWNQTSDPPPLNLGSPEKTAIVEIQRNGGAFRPFQKEKPGGGGTPSSSGPAPTAATSSTGSGGTNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGAHVATPKQIRELMKVDSLTNDEVKSHLQKYRLHTRRPSSTMQSNGSTQAAQFLVVGGIWVPAAEYATTATTNGVYAPVVGAAPPQPLPLPATVQKPKPKHATAAVECNSPTASSSTHTSSISPAS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7308494 7311134 + Sed0014412.1 Sed03g1171 706658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1171 347 MobiDBLite consensus disorder prediction 169 186 - -
Sed03g1171 347 MobiDBLite consensus disorder prediction 187 204 - -
Sed03g1171 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677(InterPro)
Sed03g1171 347 FunFam Myb family transcription factor 199 257 - -
Sed03g1171 347 Gene3D - 199 257 - -
Sed03g1171 347 MobiDBLite consensus disorder prediction 309 347 - -
Sed03g1171 347 MobiDBLite consensus disorder prediction 328 347 - -
Sed03g1171 347 SUPERFAMILY Homeodomain-like 198 258 IPR009057 -
Sed03g1171 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 257 IPR017930 -
Sed03g1171 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 306 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1171 347 Pfam Myb-like DNA-binding domain 202 253 IPR001005 -
Sed03g1171 347 MobiDBLite consensus disorder prediction 154 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1171 Sed-Chr3:7308494 Sed08g0734 Sed-Chr8:5379300 1.60E-41 dispersed
Sed03g1171 Sed-Chr3:7308494 Sed03g1172 Sed-Chr3:7308494 2.40E-138 tandem
Sed03g1171 Sed-Chr3:7308494 Sed06g1866 Sed-Chr6:43048076 2.80E-62 wgd
Sed03g1171 Sed-Chr3:7308494 Sed07g2059 Sed-Chr7:35923777 3.70E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37829 PF00249 Myb_DNA-binding 8.60E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1171 - - - 0.0