Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed03g1172	ATGGTTAAACCCCGACCCGACCCGACTCCATTGTACTGGAGCTCCTCTGTTTTTCATTTTCTCATTTGGGTTTTTTTTGCAGCGATTGATTGTTGCAGGACTCAGTCATCGGAGACGACGACGACGGAGAATCCGCTATCGGAGTGTTCAGAGCAGACTTCCACCGAGATGGGTCCGGTTCTTGAGGAGTTTATTCCGATGAACAGAAATGGGGTTGCGGATTTTGAAGCTCAAACGGAGAAGATCGACGCCTCTGAACCGGATAATTTGAATTTGGCCCCGTCGGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCTCTGAATCTGGGCTCGCCGGAGAAGACGGCCATTGTTGAGATACAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAACCCGGTGGCGGAGGGACGCCGTCGTCTTCCGGTCCGGCTCCGACGGCTGCGACTAGCTCGACCGGGTCCGGTGGAACCAACCGACGGGAAGAGAAGGAGGCGCAAAATCAGAGGAAACAGAGACGGTGTTGGTCGCCGGAGCTTCACCGGCGATTCCTTCATGCGCTTCAACAGCTCGGCGGTGCTCATGTGGCGACGCCGAAGCAAATCAGAGAATTGATGAAAGTGGATAGTCTTACCAACGATGAAGTGAAAAGTCATTTACAGAAATATCGTCTCCACACAAGACGGCCAAGTTCGACGATGCAGAGCAATGGCAGCACCCAGGCGGCGCAGTTCCTGGTAGTGGGCGGCATTTGGGTACCGGCGGCGGAGTACGCCACCACAGCCACCACCAACGGTGTTTATGCACCGGTGGTTGGGGCGGCGCCACCGCAACCATTACCATTACCCGCCACCGTCCAAAAACCCAAGCCCAAGCATGCTACCGCCGCCGTTGAATGCAATTCTCCTACTGCATCTTCCTCTACTCATACATCTTCAATTTCACCAGCTTCTTAG	981	54.33	MVKPRPDPTPLYWSSSVFHFLIWVFFAAIDCCRTQSSETTTTENPLSECSEQTSTEMGPVLEEFIPMNRNGVADFEAQTEKIDASEPDNLNLAPSDWLRSAQLWNQTSDPPPLNLGSPEKTAIVEIQRNGGAFRPFQKEKPGGGGTPSSSGPAPTAATSSTGSGGTNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGAHVATPKQIRELMKVDSLTNDEVKSHLQKYRLHTRRPSSTMQSNGSTQAAQFLVVGGIWVPAAEYATTATTNGVYAPVVGAAPPQPLPLPATVQKPKPKHATAAVECNSPTASSSTHTSSISPAS	326

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	7308494	7311134	+	Sed0014412.2	Sed03g1172	706659

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sed03g1172	326	MobiDBLite	consensus disorder prediction	307	326	-	-
Sed03g1172	326	MobiDBLite	consensus disorder prediction	288	326	-	-
Sed03g1172	326	MobiDBLite	consensus disorder prediction	133	183	-	-
Sed03g1172	326	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	28	285	IPR044787	GO:0003700(InterPro)\|GO:0006355(InterPro)
Sed03g1172	326	MobiDBLite	consensus disorder prediction	148	165	-	-
Sed03g1172	326	MobiDBLite	consensus disorder prediction	166	183	-	-
Sed03g1172	326	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	179	234	IPR006447	GO:0003677(InterPro)
Sed03g1172	326	SUPERFAMILY	Homeodomain-like	177	237	IPR009057	-
Sed03g1172	326	Pfam	Myb-like DNA-binding domain	181	232	IPR001005	-
Sed03g1172	326	Gene3D	-	178	236	-	-
Sed03g1172	326	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	176	236	IPR017930	-
Sed03g1172	326	FunFam	Myb family transcription factor	178	236	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed03g1172	-	-	-	-	0.0

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed03g1172	Sed-Chr3:7308494	Sed07g2059	Sed-Chr7:35923777	1.90E-52	dispersed
	Sed03g1171	Sed-Chr3:7308494	Sed03g1172	Sed-Chr3:7308494	2.40E-138	tandem

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Sed12g0380	.	12	318	G2-like Transcription Factor Family	AT3G24120	56.4	1.3e-76	284.3
Sed02g1495	.	12	268	G2-like Transcription Factor Family	AT3G24120	57.5	2.3e-68	256.9
Sed12g0381	.	12	175	G2-like Transcription Factor Family	AT3G24120	73.8	8.3e-63	238.4
Sed04g3561	.	18	166	G2-like Transcription Factor Family	AT3G24120	61.2	1.5e-40	164.5
Sed01g0769	.	20	165	G2-like Transcription Factor Family	AT3G24120	60.9	5.8e-40	162.5
Sed05g3314	.	22	167	G2-like Transcription Factor Family	AT3G24120	60.8	7.6e-40	162.2
Sed04g3560	.	18	169	G2-like Transcription Factor Family	AT3G24120	59.8	9.9e-40	161.8
Sed14g1265	.	26	144	G2-like Transcription Factor Family	AT3G24120	66.4	1.6e-37	154.5
Sed01g4135	.	184	368	G2-like Transcription Factor Family	AT5G16560	53.5	5.4e-41	166.4
Sed01g4134	.	184	376	G2-like Transcription Factor Family	AT5G16560	51.9	2.1e-40	164.5
Sed01g2622	.	11	166	G2-like Transcription Factor Family	AT5G42630	60.7	9.1e-38	154.8
Sed13g1417	.	1	321	G2-like Transcription Factor Family	AT5G59570	50.8	5.0e-60	229.2
Sed13g1418	.	1	321	G2-like Transcription Factor Family	AT5G59570	50.8	5.0e-60	229.2
Sed13g1419	.	1	321	G2-like Transcription Factor Family	AT5G59570	50.8	5.0e-60	229.2
Sed13g1420	.	1	321	G2-like Transcription Factor Family	AT5G59570	50.8	5.0e-60	229.2
Sed10g1420	.	1	353	G2-like Transcription Factor Family	AT2G03500	57.1	1.6e-83	307.8
Sed03g1171	.	20	250	G2-like Transcription Factor Family	AT1G25550	53.7	1.8e-51	200.7
Sed06g1866	.	15	251	G2-like Transcription Factor Family	AT1G25550	52.5	3.5e-47	186.4
Sed03g1172	.	28	229	G2-like Transcription Factor Family	AT1G25550	53.0	1.3e-41	167.9
Sed13g1417	.	1	280	G2-like Transcription Factor Family	AT3G46640	52.5	1.7e-61	234.2
Sed13g1418	.	1	280	G2-like Transcription Factor Family	AT3G46640	52.5	1.7e-61	234.2
Sed13g1419	.	1	280	G2-like Transcription Factor Family	AT3G46640	52.5	1.7e-61	234.2
Sed13g1420	.	1	280	G2-like Transcription Factor Family	AT3G46640	52.5	1.7e-61	234.2
Sed14g0045	.	1	299	G2-like Transcription Factor Family	AT5G05090	56.5	2.9e-75	279.6
Sed03g2144	.	1	293	G2-like Transcription Factor Family	AT5G05090	56.3	7.9e-73	271.6
Sed02g0794	.	1	276	G2-like Transcription Factor Family	AT5G05090	53.6	4.2e-66	249.2
Sed12g1174	.	1	252	G2-like Transcription Factor Family	AT5G05090	53.9	9.7e-63	238.0
Sed02g1495	.	12	316	G2-like Transcription Factor Family	AT4G13640	57.5	3.8e-60	229.6
Sed12g0380	.	12	318	G2-like Transcription Factor Family	AT4G13640	51.8	4.7e-58	222.6
Sed12g0381	.	12	141	G2-like Transcription Factor Family	AT4G13640	71.8	8.3e-47	185.3
Sed01g4272	.	149	402	G2-like Transcription Factor Family	AT3G04450	55.3	1.9e-54	211.1
Sed01g4273	.	149	403	G2-like Transcription Factor Family	AT3G04450	54.9	9.5e-54	208.8
Sed01g4275	.	149	362	G2-like Transcription Factor Family	AT3G04450	52.1	5.4e-49	193.0
Sed12g0380	.	12	318	G2-like Transcription Factor Family	AT3G24120	56.4	1.3e-76	284.3
Sed02g1495	.	12	268	G2-like Transcription Factor Family	AT3G24120	57.5	2.3e-68	256.9
Sed12g0381	.	12	175	G2-like Transcription Factor Family	AT3G24120	73.8	8.3e-63	238.4
Sed04g3561	.	18	166	G2-like Transcription Factor Family	AT3G24120	61.2	1.5e-40	164.5
Sed01g0769	.	20	165	G2-like Transcription Factor Family	AT3G24120	60.9	5.8e-40	162.5
Sed05g3314	.	22	167	G2-like Transcription Factor Family	AT3G24120	60.8	7.6e-40	162.2
Sed04g3560	.	18	169	G2-like Transcription Factor Family	AT3G24120	59.8	9.9e-40	161.8
Sed14g1265	.	26	144	G2-like Transcription Factor Family	AT3G24120	66.4	1.6e-37	154.5
Sed08g1979	.	1	231	G2-like Transcription Factor Family	AT1G69580	52.6	1.8e-45	181.0
Sed02g0909	.	47	248	G2-like Transcription Factor Family	AT1G69580	53.2	3.3e-39	160.2
Sed02g0908	.	47	254	G2-like Transcription Factor Family	AT1G69580	51.2	4.7e-38	156.4
Sed04g3560	.	1	346	G2-like Transcription Factor Family	AT1G79430	58.0	2.5e-90	330.1
Sed04g3561	.	1	343	G2-like Transcription Factor Family	AT1G79430	57.1	3.1e-88	323.2
Sed05g3314	.	1	362	G2-like Transcription Factor Family	AT1G79430	53.7	4.6e-76	282.7
Sed01g0769	.	1	341	G2-like Transcription Factor Family	AT1G79430	54.5	1.1e-74	278.1
Sed12g0380	.	40	206	G2-like Transcription Factor Family	AT1G79430	61.7	2.8e-41	167.2
Sed02g1495	.	26	202	G2-like Transcription Factor Family	AT1G79430	55.2	2.1e-36	151.0
Sed12g0381	.	40	169	G2-like Transcription Factor Family	AT1G79430	60.8	2.7e-36	150.6
Sed10g0529	.	54	294	G2-like Transcription Factor Family	AT2G01060	58.8	1.6e-53	207.2
Sed14g0045	.	1	299	G2-like Transcription Factor Family	AT3G10760	62.7	1.3e-93	340.9
Sed03g2144	.	1	293	G2-like Transcription Factor Family	AT3G10760	60.3	9.9e-89	324.7
Sed02g0794	.	1	276	G2-like Transcription Factor Family	AT3G10760	54.4	5.8e-73	272.3
Sed14g0045	.	1	201	G2-like Transcription Factor Family	AT2G40970	61.7	5.3e-63	238.8
Sed03g2144	.	1	186	G2-like Transcription Factor Family	AT2G40970	62.1	2.6e-57	219.9
Sed02g0794	.	1	180	G2-like Transcription Factor Family	AT2G40970	64.5	5.3e-55	212.2
Sed01g4275	.	181	373	G2-like Transcription Factor Family	AT2G20400	51.4	5.4e-41	166.4

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0004323	2	1	3	2	2	1	2	1	1	1	1	1	2	1	1	2	1	4	2	1	1	1	1	1	1	1	1	2	1	1	43

Regulatory proteins

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	37830	PF00249	Myb_DNA-binding	7.80E-06	CL0123	Sed	TF