Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1172 ATGGTTAAACCCCGACCCGACCCGACTCCATTGTACTGGAGCTCCTCTGTTTTTCATTTTCTCATTTGGGTTTTTTTTGCAGCGATTGATTGTTGCAGGACTCAGTCATCGGAGACGACGACGACGGAGAATCCGCTATCGGAGTGTTCAGAGCAGACTTCCACCGAGATGGGTCCGGTTCTTGAGGAGTTTATTCCGATGAACAGAAATGGGGTTGCGGATTTTGAAGCTCAAACGGAGAAGATCGACGCCTCTGAACCGGATAATTTGAATTTGGCCCCGTCGGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCTCTGAATCTGGGCTCGCCGGAGAAGACGGCCATTGTTGAGATACAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAACCCGGTGGCGGAGGGACGCCGTCGTCTTCCGGTCCGGCTCCGACGGCTGCGACTAGCTCGACCGGGTCCGGTGGAACCAACCGACGGGAAGAGAAGGAGGCGCAAAATCAGAGGAAACAGAGACGGTGTTGGTCGCCGGAGCTTCACCGGCGATTCCTTCATGCGCTTCAACAGCTCGGCGGTGCTCATGTGGCGACGCCGAAGCAAATCAGAGAATTGATGAAAGTGGATAGTCTTACCAACGATGAAGTGAAAAGTCATTTACAGAAATATCGTCTCCACACAAGACGGCCAAGTTCGACGATGCAGAGCAATGGCAGCACCCAGGCGGCGCAGTTCCTGGTAGTGGGCGGCATTTGGGTACCGGCGGCGGAGTACGCCACCACAGCCACCACCAACGGTGTTTATGCACCGGTGGTTGGGGCGGCGCCACCGCAACCATTACCATTACCCGCCACCGTCCAAAAACCCAAGCCCAAGCATGCTACCGCCGCCGTTGAATGCAATTCTCCTACTGCATCTTCCTCTACTCATACATCTTCAATTTCACCAGCTTCTTAG 981 54.33 MVKPRPDPTPLYWSSSVFHFLIWVFFAAIDCCRTQSSETTTTENPLSECSEQTSTEMGPVLEEFIPMNRNGVADFEAQTEKIDASEPDNLNLAPSDWLRSAQLWNQTSDPPPLNLGSPEKTAIVEIQRNGGAFRPFQKEKPGGGGTPSSSGPAPTAATSSTGSGGTNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGAHVATPKQIRELMKVDSLTNDEVKSHLQKYRLHTRRPSSTMQSNGSTQAAQFLVVGGIWVPAAEYATTATTNGVYAPVVGAAPPQPLPLPATVQKPKPKHATAAVECNSPTASSSTHTSSISPAS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7308494 7311134 + Sed0014412.2 Sed03g1172 706659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1172 326 MobiDBLite consensus disorder prediction 307 326 - -
Sed03g1172 326 MobiDBLite consensus disorder prediction 288 326 - -
Sed03g1172 326 MobiDBLite consensus disorder prediction 133 183 - -
Sed03g1172 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 28 285 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1172 326 MobiDBLite consensus disorder prediction 148 165 - -
Sed03g1172 326 MobiDBLite consensus disorder prediction 166 183 - -
Sed03g1172 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 234 IPR006447 GO:0003677(InterPro)
Sed03g1172 326 SUPERFAMILY Homeodomain-like 177 237 IPR009057 -
Sed03g1172 326 Pfam Myb-like DNA-binding domain 181 232 IPR001005 -
Sed03g1172 326 Gene3D - 178 236 - -
Sed03g1172 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 236 IPR017930 -
Sed03g1172 326 FunFam Myb family transcription factor 178 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1172 Sed-Chr3:7308494 Sed07g2059 Sed-Chr7:35923777 1.90E-52 dispersed
Sed03g1171 Sed-Chr3:7308494 Sed03g1172 Sed-Chr3:7308494 2.40E-138 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37830 PF00249 Myb_DNA-binding 7.80E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1172 - - - 0.0