Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1174 | ATGGCGGATTGGACGTTGGAGATAGAAACAAAGGTTACGGGAGACGACAGTGGGCAAATCCACACGCGGTTTCTTCCGCATATTGAGGAGCTTCAACAATCCGCTGCTGCTTTTCATCACAATGATGCTGTTGATTTAAGACCAAGCTCTGTTTACAATTTAAAATCGACCCACCAAAACGCAGGTTTTCCAATCCACCAACCATACCCGAACACGAATGTGGGTTCTATAGGATCAGGGTATTTAGATTCATCGCAGCAATTGATGAGGTTGAAGAGGCTTGCGCCGCCGCATGCGGCGGCGGCTACGGCGGCGACTGTGTCATCGTTGGGAAACGGGTGCTTTGAGAACTGGGGCGAGTCAGCCGTAGCAGATAACAGCCAGCAGACCGACACTTCCACAGACATCGACAACGATGAAAGAAACCAGTTTCAGGGAGCTGGTCATGGAGGTCTCATGGTGGTGGACTCCATGGATCAATCCAAACCAAAATCTACAGATCAGAAGACTCTTCGTAGGCTGGCTCAGAATCGAGAAGCAGCCCGGAAGAGTCGGCTGAGGAAGAAAGCTTATGTTCAGCAGCTGGAAAGTAGTCGGCAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGTGTTTTTGTCGCTTCTGGGGCAGGAGACCAATGTTTATCAATGGCAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGCTCGATGGCTCGACGAGCATCAACGGCTGATCAAAGATTTGAGAGCATCTGTGAATTCTCAGATGCGCGATGATGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAGGATCAAGAGTGTAGGTGCCAAGGCCGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTAGGAGGATTCCGTTCGTCTGAAATTCTGAAGATCGTTGGGAACCATTTGGAGCCTTTAACAGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTGTCAACAAGCTGAGGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTTGGGAAATGTTGCTGATTACATGGGCCAAATGGCGATTGCCATGAGCAAGCTAACGACGCTCGAGAGCTTTCTCCATCAGGCTGATCTTCTGAGGCAGCAAACACTACAACAGATGTATCGAATATTAACTACCCGCCAAGCTGCACGAGCGCTTCTTGTAATCAACGATTACATTTCACGTCTTCAAGCTCTCAGTTCTCTGTGGTTAGCACGACCGAGAGACTGA | 1365 | 48.79 | MADWTLEIETKVTGDDSGQIHTRFLPHIEELQQSAAAFHHNDAVDLRPSSVYNLKSTHQNAGFPIHQPYPNTNVGSIGSGYLDSSQQLMRLKRLAPPHAAAATAATVSSLGNGCFENWGESAVADNSQQTDTSTDIDNDERNQFQGAGHGGLMVVDSMDQSKPKSTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRQRLAQLEQELHRARQQGVFVASGAGDQCLSMAGNGALAFDLDYARWLDEHQRLIKDLRASVNSQMRDDELRFLVDGVMAHYDELFRIKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSEILKIVGNHLEPLTDQQLMGICNLQQSCQQAEDALSQGIEALQQSLVETLSTASLGPASLGNVADYMGQMAIAMSKLTTLESFLHQADLLRQQTLQQMYRILTTRQAARALLVINDYISRLQALSSLWLARPRD | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7331470 | 7334704 | + | Sed0009401.1 | Sed03g1174 | 706661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1174 | 454 | Pfam | Seed dormancy control | 253 | 326 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed03g1174 | 454 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 167 | 211 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1174 | 454 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 172 | 187 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1174 | 454 | ProSiteProfiles | DOG1 domain profile. | 235 | 451 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed03g1174 | 454 | Coils | Coil | 246 | 266 | - | - | |
Sed03g1174 | 454 | Pfam | bZIP transcription factor | 169 | 208 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1174 | 454 | SUPERFAMILY | Leucine zipper domain | 169 | 212 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1174 | 454 | Coils | Coil | 188 | 215 | - | - | |
Sed03g1174 | 454 | FunFam | BZIP family transcription factor | 168 | 217 | - | - | |
Sed03g1174 | 454 | SMART | brlzneu | 165 | 229 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1174 | 454 | CDD | bZIP_HBP1b-like | 169 | 221 | - | - | |
Sed03g1174 | 454 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 125 | 454 | - | - | |
Sed03g1174 | 454 | Gene3D | - | 168 | 216 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1174 | Sed-Chr3:7331470 | Sed04g0071 | Sed-Chr4:431713 | 5.00E-120 | dispersed | |
Sed11g1626 | Sed-Chr11:31597841 | Sed03g1174 | Sed-Chr3:7331470 | 5.80E-193 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37831 | PF14144 | DOG1 | 4.80E-30 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1174 | K14431 | - | csv:101210308 | 734.561 |