Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1174 ATGGCGGATTGGACGTTGGAGATAGAAACAAAGGTTACGGGAGACGACAGTGGGCAAATCCACACGCGGTTTCTTCCGCATATTGAGGAGCTTCAACAATCCGCTGCTGCTTTTCATCACAATGATGCTGTTGATTTAAGACCAAGCTCTGTTTACAATTTAAAATCGACCCACCAAAACGCAGGTTTTCCAATCCACCAACCATACCCGAACACGAATGTGGGTTCTATAGGATCAGGGTATTTAGATTCATCGCAGCAATTGATGAGGTTGAAGAGGCTTGCGCCGCCGCATGCGGCGGCGGCTACGGCGGCGACTGTGTCATCGTTGGGAAACGGGTGCTTTGAGAACTGGGGCGAGTCAGCCGTAGCAGATAACAGCCAGCAGACCGACACTTCCACAGACATCGACAACGATGAAAGAAACCAGTTTCAGGGAGCTGGTCATGGAGGTCTCATGGTGGTGGACTCCATGGATCAATCCAAACCAAAATCTACAGATCAGAAGACTCTTCGTAGGCTGGCTCAGAATCGAGAAGCAGCCCGGAAGAGTCGGCTGAGGAAGAAAGCTTATGTTCAGCAGCTGGAAAGTAGTCGGCAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGTGTTTTTGTCGCTTCTGGGGCAGGAGACCAATGTTTATCAATGGCAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGCTCGATGGCTCGACGAGCATCAACGGCTGATCAAAGATTTGAGAGCATCTGTGAATTCTCAGATGCGCGATGATGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAGGATCAAGAGTGTAGGTGCCAAGGCCGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTAGGAGGATTCCGTTCGTCTGAAATTCTGAAGATCGTTGGGAACCATTTGGAGCCTTTAACAGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTGTCAACAAGCTGAGGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTTGGGAAATGTTGCTGATTACATGGGCCAAATGGCGATTGCCATGAGCAAGCTAACGACGCTCGAGAGCTTTCTCCATCAGGCTGATCTTCTGAGGCAGCAAACACTACAACAGATGTATCGAATATTAACTACCCGCCAAGCTGCACGAGCGCTTCTTGTAATCAACGATTACATTTCACGTCTTCAAGCTCTCAGTTCTCTGTGGTTAGCACGACCGAGAGACTGA 1365 48.79 MADWTLEIETKVTGDDSGQIHTRFLPHIEELQQSAAAFHHNDAVDLRPSSVYNLKSTHQNAGFPIHQPYPNTNVGSIGSGYLDSSQQLMRLKRLAPPHAAAATAATVSSLGNGCFENWGESAVADNSQQTDTSTDIDNDERNQFQGAGHGGLMVVDSMDQSKPKSTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRQRLAQLEQELHRARQQGVFVASGAGDQCLSMAGNGALAFDLDYARWLDEHQRLIKDLRASVNSQMRDDELRFLVDGVMAHYDELFRIKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSEILKIVGNHLEPLTDQQLMGICNLQQSCQQAEDALSQGIEALQQSLVETLSTASLGPASLGNVADYMGQMAIAMSKLTTLESFLHQADLLRQQTLQQMYRILTTRQAARALLVINDYISRLQALSSLWLARPRD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7331470 7334704 + Sed0009401.1 Sed03g1174 706661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1174 454 Pfam Seed dormancy control 253 326 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g1174 454 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 211 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1174 454 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1174 454 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g1174 454 Coils Coil 246 266 - -
Sed03g1174 454 Pfam bZIP transcription factor 169 208 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1174 454 SUPERFAMILY Leucine zipper domain 169 212 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1174 454 Coils Coil 188 215 - -
Sed03g1174 454 FunFam BZIP family transcription factor 168 217 - -
Sed03g1174 454 SMART brlzneu 165 229 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1174 454 CDD bZIP_HBP1b-like 169 221 - -
Sed03g1174 454 PANTHER TRANSCRIPTION FACTOR TGA9 125 454 - -
Sed03g1174 454 Gene3D - 168 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1174 Sed-Chr3:7331470 Sed04g0071 Sed-Chr4:431713 5.00E-120 dispersed
Sed11g1626 Sed-Chr11:31597841 Sed03g1174 Sed-Chr3:7331470 5.80E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37831 PF14144 DOG1 4.80E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1174 K14431 - csv:101210308 734.561