Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1195 ATGCAAAGCTCAAACTTGACTTGCTGCATCTCATCAAGCGATAGCGCCTGTTTGGATCAGCCTGGTGACGAAGGAGGAGAAGAATCCATTTTCCTTTCCCTTTCTCCTCCTGGCCAGCAACAACAACAACAACGCCCACGCTACTCCATTTCTACATCCACTTCCAAACATCACAAACAAACCAAACAAAACCCTAATCAAGATCCCACGGCGGCTGCTTCTTCAGCGGTCACCGTCGCCATGCACATTGCCCTTCCTAATTCCCTCTCCGCCGCCGCAGCCCGGCCGGTGGAGCCACACTACTGGATCCCTTCGCCTGCTCAAATCCTTGTTGGTCCCACCCAATTCTCTTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCATTAAGAGGATCAAAGCCAGCATCATCAATGCTCAGACTTCCATGCTATTGCTGTGCAGAGGGCTGCAAGAACAACATAGATCACCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCACTTGTAGGAAATGTGGCAAGCCCTTTGCTGTTAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGAAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGGGATGGCCATGCACCTCATACTGTTCAAGTTTGCGAGGTCGAAGATGATGATGATGATGATGATGATGATAATTGGGACAATCGTGAGGGTCGTGATGATCATCATGAACATGTAAATCCACTTCAAGGCTGGTCAATTTATCATTAG 894 47.65 MQSSNLTCCISSSDSACLDQPGDEGGEESIFLSLSPPGQQQQQQRPRYSISTSTSKHHKQTKQNPNQDPTAAASSAVTVAMHIALPNSLSAAAARPVEPHYWIPSPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFTCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQVCEVEDDDDDDDDDNWDNREGRDDHHEHVNPLQGWSIYH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7546114 7547661 - Sed0004963.1 Sed03g1195 706682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1195 297 Gene3D Classic Zinc Finger 115 138 - -
Sed03g1195 297 MobiDBLite consensus disorder prediction 262 286 - -
Sed03g1195 297 MobiDBLite consensus disorder prediction 12 74 - -
Sed03g1195 297 PANTHER ZINC FINGER PROTEIN WIP2 97 272 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed03g1195 297 SUPERFAMILY beta-beta-alpha zinc fingers 112 138 IPR036236 -
Sed03g1195 297 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 200 224 - -
Sed03g1195 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Sed03g1195 297 SMART c2h2final6 201 221 IPR013087 -
Sed03g1195 297 SMART c2h2final6 116 138 IPR013087 -
Sed03g1195 297 SMART c2h2final6 164 196 IPR013087 -
Sed03g1195 297 FunFam Zinc finger protein WIP2 170 252 - -
Sed03g1195 297 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Sed03g1195 297 SUPERFAMILY beta-beta-alpha zinc fingers 184 221 IPR036236 -
Sed03g1195 297 MobiDBLite consensus disorder prediction 33 74 - -
Sed03g1195 297 Gene3D Classic Zinc Finger 199 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1195 Sed-Chr3:7546114 Sed05g1132 Sed-Chr5:11349122 7.70E-85 dispersed
Sed11g1595 Sed-Chr11:31452639 Sed03g1195 Sed-Chr3:7546114 3.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37834 PF00096 zf-C2H2 0.0097 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1195 - - - 0.0