Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1195 | ATGCAAAGCTCAAACTTGACTTGCTGCATCTCATCAAGCGATAGCGCCTGTTTGGATCAGCCTGGTGACGAAGGAGGAGAAGAATCCATTTTCCTTTCCCTTTCTCCTCCTGGCCAGCAACAACAACAACAACGCCCACGCTACTCCATTTCTACATCCACTTCCAAACATCACAAACAAACCAAACAAAACCCTAATCAAGATCCCACGGCGGCTGCTTCTTCAGCGGTCACCGTCGCCATGCACATTGCCCTTCCTAATTCCCTCTCCGCCGCCGCAGCCCGGCCGGTGGAGCCACACTACTGGATCCCTTCGCCTGCTCAAATCCTTGTTGGTCCCACCCAATTCTCTTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCATTAAGAGGATCAAAGCCAGCATCATCAATGCTCAGACTTCCATGCTATTGCTGTGCAGAGGGCTGCAAGAACAACATAGATCACCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCACTTGTAGGAAATGTGGCAAGCCCTTTGCTGTTAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGAAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGGGATGGCCATGCACCTCATACTGTTCAAGTTTGCGAGGTCGAAGATGATGATGATGATGATGATGATGATAATTGGGACAATCGTGAGGGTCGTGATGATCATCATGAACATGTAAATCCACTTCAAGGCTGGTCAATTTATCATTAG | 894 | 47.65 | MQSSNLTCCISSSDSACLDQPGDEGGEESIFLSLSPPGQQQQQQRPRYSISTSTSKHHKQTKQNPNQDPTAAASSAVTVAMHIALPNSLSAAAARPVEPHYWIPSPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFTCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQVCEVEDDDDDDDDDNWDNREGRDDHHEHVNPLQGWSIYH | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7546114 | 7547661 | - | Sed0004963.1 | Sed03g1195 | 706682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1195 | 297 | Gene3D | Classic Zinc Finger | 115 | 138 | - | - | |
Sed03g1195 | 297 | MobiDBLite | consensus disorder prediction | 262 | 286 | - | - | |
Sed03g1195 | 297 | MobiDBLite | consensus disorder prediction | 12 | 74 | - | - | |
Sed03g1195 | 297 | PANTHER | ZINC FINGER PROTEIN WIP2 | 97 | 272 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Sed03g1195 | 297 | SUPERFAMILY | beta-beta-alpha zinc fingers | 112 | 138 | IPR036236 | - | |
Sed03g1195 | 297 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 200 | 224 | - | - | |
Sed03g1195 | 297 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 116 | 143 | IPR013087 | - | |
Sed03g1195 | 297 | SMART | c2h2final6 | 201 | 221 | IPR013087 | - | |
Sed03g1195 | 297 | SMART | c2h2final6 | 116 | 138 | IPR013087 | - | |
Sed03g1195 | 297 | SMART | c2h2final6 | 164 | 196 | IPR013087 | - | |
Sed03g1195 | 297 | FunFam | Zinc finger protein WIP2 | 170 | 252 | - | - | |
Sed03g1195 | 297 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 118 | 138 | IPR013087 | - | |
Sed03g1195 | 297 | SUPERFAMILY | beta-beta-alpha zinc fingers | 184 | 221 | IPR036236 | - | |
Sed03g1195 | 297 | MobiDBLite | consensus disorder prediction | 33 | 74 | - | - | |
Sed03g1195 | 297 | Gene3D | Classic Zinc Finger | 199 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1195 | Sed-Chr3:7546114 | Sed05g1132 | Sed-Chr5:11349122 | 7.70E-85 | dispersed | |
Sed11g1595 | Sed-Chr11:31452639 | Sed03g1195 | Sed-Chr3:7546114 | 3.20E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37834 | PF00096 | zf-C2H2 | 0.0097 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1195 | - | - | - | 0.0 |