Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1196 ATGGACGACGAAAGCACAGCCAGTGACTCCACCTCCATTTCTCCGGTCACCCCATTGCTATTCAACGCATCTCCGTCGCCATCGCCGCCGGTTGCGGCGGCCGGAACAATACCATACGAGGCGGAATCTCGAAAGCTTCCATCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGCGCTCAGATTTACGAGAAGCACCAAAGGGTTTGGCTCGGCACCTTCAACGAAGAGCACGACGCCGCCAAAGCCTACGACATCGCCGCCCTCCGTTTCCGAGGCCGCGACGCCGTCACCAATTTCAAATCTGCCGCCGCCGCCGCCGACGCCGACGAGGCCGAATTCCTCAACTCCCACTCCAAGCTCGAAATCGTCGATATGCTACGAAAGCACACGTACAATGACGAGCTCCAGCAGAGCAAGCGCCACCGCACGGCGGCGCCCACGGCGGAGCTGCCGTGCCTTCTCCACCGGGGGTCGGACTCGGACCGGGAGGTTCTGTTCGAGAAGACCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATTCCGAAACAGCACGCGGAGAAAAACTTTCCGTTGGGAGACGGCGTCGTTTCGGCTAATGGAATGCTTTTGAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGTTACTCGTATTGGAACAGCAGTCAAAGCTATGTGCTGACCAAGGGCTGGAGCCGGTTCGTTAAAGACAAGGCCCTCCGAGCCGGGGATGCCGTCCGGTTCCTACGCTCCACCGGCCCGGATAAACAGCTTTACATCGATGCCAGACCGGCCCTGGCGAGCCCGGTTCATGTGGTCAAGCTTTTTGGGGTTAATATTTTGGAAGTGCCGGTGGGCTGTTGTGGGAAGAGAGAGAGAGAAGGGTTGTTGGATTTACAAGGGACCAAAAAGCAAAGAATAATCAAAGCTTTGTAA 963 57.84 MDDESTASDSTSISPVTPLLFNASPSPSPPVAAAGTIPYEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKSAAAAADADEAEFLNSHSKLEIVDMLRKHTYNDELQQSKRHRTAAPTAELPCLLHRGSDSDREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLGDGVVSANGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKALRAGDAVRFLRSTGPDKQLYIDARPALASPVHVVKLFGVNILEVPVGCCGKREREGLLDLQGTKKQRIIKAL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7577351 7578411 - Sed0001515.1 Sed03g1196 706683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1196 320 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 274 IPR044800 GO:0003700(InterPro)
Sed03g1196 320 CDD B3_DNA 170 257 IPR003340 GO:0003677(InterPro)
Sed03g1196 320 MobiDBLite consensus disorder prediction 7 21 - -
Sed03g1196 320 CDD AP2 49 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 MobiDBLite consensus disorder prediction 1 34 - -
Sed03g1196 320 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677(InterPro)
Sed03g1196 320 FunFam AP2 domain-containing protein RAP2.8 49 106 - -
Sed03g1196 320 Pfam B3 DNA binding domain 171 268 IPR003340 GO:0003677(InterPro)
Sed03g1196 320 SMART B3_2 171 275 IPR003340 GO:0003677(InterPro)
Sed03g1196 320 PRINTS Ethylene responsive element binding protein signature 87 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 SUPERFAMILY DNA-binding pseudobarrel domain 167 261 IPR015300 -
Sed03g1196 320 Gene3D - 161 279 IPR015300 -
Sed03g1196 320 ProSiteProfiles AP2/ERF domain profile. 50 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 SMART rav1_2 50 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1196 320 ProSiteProfiles B3 DNA-binding domain profile. 171 273 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1196 Sed-Chr3:7577351 Sed07g2058 Sed-Chr7:35877195 2.20E-98 dispersed
Sed03g1196 Sed-Chr3:7577351 Sed06g1865 Sed-Chr6:43035548 1.20E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37835 PF02362 B3 3.60E-27 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1196 K09287 - csv:101206328 457.218