Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1198 | ATGAAAGAGGAAGGAGAGTGGTTTCAAGGGTTCCAAGAGCAGTTTCTAATGCAACATAACGACGACGGTTTCGGAGGGGGATTCGACCCGACTCGAGACCGCCTCGAGCCGTTGATCCATCCAGCTTCTTACGCCGGCTTTTTCAATCGGAGAAATGCTTCTTCTCTGCAGTTTCCTTATGATATTGGTAATAGTTATGTAGGGATCGGGCAGATGGGTCAGGGTGGATCTTCCCCGTTTGGGCTGCAGGCCGAGCTGACCAAGATGACCGCTCAAGAAATCATGGACGCTAAAGCACTTGCAGCCTCAAAAACTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCCAAGTTAAGAAGTTTGCTTCCAAGTACCACAAAAACGGACAAGGCATCATTGCTTGCAGAAGTAATCCAACATGTGAAAGAGCTAAAACGACAGACGACATTGATAGCCGACGTAAGTCCTGTACCGACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATAAAAGCCTCCCTTTGTTGTGAGGACAGGTCCGATCTCCTCCCACAGATCATCGAAACCCTAAAATCCCTCCGCCTGAGAACCCTAAAAGCAGAGATCACAGCACTCGGTGGCCGCGTAAAGAACGTGTTGTTCATCACCGACGACTCCACGGGCGACGAAGAAGAGCCTCAACTCCACAACCAATACAGCATCAGCTCAATTCAAGAAGCCCTAAAGGCAGTGATGGAAAAGGTTTGCAGAGAAGATCCGTCGTCTTCGGGCAGTCTTAAACGACAAAGGACCAATCATCACAAGAACATGAATATGGTTGAACATAGATCTTATTAA | 882 | 48.07 | MKEEGEWFQGFQEQFLMQHNDDGFGGGFDPTRDRLEPLIHPASYAGFFNRRNASSLQFPYDIGNSYVGIGQMGQGGSSPFGLQAELTKMTAQEIMDAKALAASKTHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIETLKSLRLRTLKAEITALGGRVKNVLFITDDSTGDEEEPQLHNQYSISSIQEALKAVMEKVCREDPSSSGSLKRQRTNHHKNMNMVEHRSY | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7629837 | 7632502 | - | Sed0018767.1 | Sed03g1198 | 706685 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1198 | 293 | FunFam | transcription factor bHLH30 | 96 | 159 | - | - | |
Sed03g1198 | 293 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 71 | 282 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1198 | 293 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 105 | 155 | IPR036638 | GO:0046983(InterPro) | |
Sed03g1198 | 293 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 101 | 150 | IPR011598 | GO:0046983(InterPro) | |
Sed03g1198 | 293 | SMART | finulus | 107 | 156 | IPR011598 | GO:0046983(InterPro) | |
Sed03g1198 | 293 | Gene3D | - | 96 | 156 | IPR036638 | GO:0046983(InterPro) | |
Sed03g1198 | 293 | MobiDBLite | consensus disorder prediction | 267 | 293 | - | - | |
Sed03g1198 | 293 | Pfam | Helix-loop-helix DNA-binding domain | 104 | 151 | IPR011598 | GO:0046983(InterPro) | |
Sed03g1198 | 293 | CDD | bHLH_AtAIG1_like | 96 | 175 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1198 | Sed-Chr3:7629837 | Sed07g2054 | Sed-Chr7:35700128 | 2.10E-82 | dispersed | |
Sed03g1198 | Sed-Chr3:7629837 | Sed03g1199 | Sed-Chr3:7629837 | 9.10E-163 | tandem | |
Sed11g1583 | Sed-Chr11:31337122 | Sed03g1198 | Sed-Chr3:7629837 | 1.50E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37836 | PF00010 | HLH | 9.90E-13 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1198 | - | - | - | 0.0 |