Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed03g1198	ATGAAAGAGGAAGGAGAGTGGTTTCAAGGGTTCCAAGAGCAGTTTCTAATGCAACATAACGACGACGGTTTCGGAGGGGGATTCGACCCGACTCGAGACCGCCTCGAGCCGTTGATCCATCCAGCTTCTTACGCCGGCTTTTTCAATCGGAGAAATGCTTCTTCTCTGCAGTTTCCTTATGATATTGGTAATAGTTATGTAGGGATCGGGCAGATGGGTCAGGGTGGATCTTCCCCGTTTGGGCTGCAGGCCGAGCTGACCAAGATGACCGCTCAAGAAATCATGGACGCTAAAGCACTTGCAGCCTCAAAAACTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCCAAGTTAAGAAGTTTGCTTCCAAGTACCACAAAAACGGACAAGGCATCATTGCTTGCAGAAGTAATCCAACATGTGAAAGAGCTAAAACGACAGACGACATTGATAGCCGACGTAAGTCCTGTACCGACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATAAAAGCCTCCCTTTGTTGTGAGGACAGGTCCGATCTCCTCCCACAGATCATCGAAACCCTAAAATCCCTCCGCCTGAGAACCCTAAAAGCAGAGATCACAGCACTCGGTGGCCGCGTAAAGAACGTGTTGTTCATCACCGACGACTCCACGGGCGACGAAGAAGAGCCTCAACTCCACAACCAATACAGCATCAGCTCAATTCAAGAAGCCCTAAAGGCAGTGATGGAAAAGGTTTGCAGAGAAGATCCGTCGTCTTCGGGCAGTCTTAAACGACAAAGGACCAATCATCACAAGAACATGAATATGGTTGAACATAGATCTTATTAA	882	48.07	MKEEGEWFQGFQEQFLMQHNDDGFGGGFDPTRDRLEPLIHPASYAGFFNRRNASSLQFPYDIGNSYVGIGQMGQGGSSPFGLQAELTKMTAQEIMDAKALAASKTHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIETLKSLRLRTLKAEITALGGRVKNVLFITDDSTGDEEEPQLHNQYSISSIQEALKAVMEKVCREDPSSSGSLKRQRTNHHKNMNMVEHRSY	293

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	7629837	7632502	-	Sed0018767.1	Sed03g1198	706685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed03g1198	293	FunFam	transcription factor bHLH30	96	159	-	-
	Sed03g1198	293	PANTHER	TRANSCRIPTION FACTOR BHLH30	71	282	IPR045847	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Sed03g1198	293	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	105	155	IPR036638	GO:0046983(InterPro)
	Sed03g1198	293	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	101	150	IPR011598	GO:0046983(InterPro)
	Sed03g1198	293	SMART	finulus	107	156	IPR011598	GO:0046983(InterPro)
	Sed03g1198	293	Gene3D	-	96	156	IPR036638	GO:0046983(InterPro)
	Sed03g1198	293	MobiDBLite	consensus disorder prediction	267	293	-	-
	Sed03g1198	293	Pfam	Helix-loop-helix DNA-binding domain	104	151	IPR011598	GO:0046983(InterPro)
	Sed03g1198	293	CDD	bHLH_AtAIG1_like	96	175	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed03g1198	Sed-Chr3:7629837	Sed07g2054	Sed-Chr7:35700128	2.10E-82	dispersed
	Sed03g1198	Sed-Chr3:7629837	Sed03g1199	Sed-Chr3:7629837	9.10E-163	tandem
	Sed11g1583	Sed-Chr11:31337122	Sed03g1198	Sed-Chr3:7629837	1.50E-123	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	37836	PF00010	HLH	9.90E-13	No_clan	Sed	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed03g1198	-		-	-	0.0