Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1198 ATGAAAGAGGAAGGAGAGTGGTTTCAAGGGTTCCAAGAGCAGTTTCTAATGCAACATAACGACGACGGTTTCGGAGGGGGATTCGACCCGACTCGAGACCGCCTCGAGCCGTTGATCCATCCAGCTTCTTACGCCGGCTTTTTCAATCGGAGAAATGCTTCTTCTCTGCAGTTTCCTTATGATATTGGTAATAGTTATGTAGGGATCGGGCAGATGGGTCAGGGTGGATCTTCCCCGTTTGGGCTGCAGGCCGAGCTGACCAAGATGACCGCTCAAGAAATCATGGACGCTAAAGCACTTGCAGCCTCAAAAACTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCCAAGTTAAGAAGTTTGCTTCCAAGTACCACAAAAACGGACAAGGCATCATTGCTTGCAGAAGTAATCCAACATGTGAAAGAGCTAAAACGACAGACGACATTGATAGCCGACGTAAGTCCTGTACCGACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATAAAAGCCTCCCTTTGTTGTGAGGACAGGTCCGATCTCCTCCCACAGATCATCGAAACCCTAAAATCCCTCCGCCTGAGAACCCTAAAAGCAGAGATCACAGCACTCGGTGGCCGCGTAAAGAACGTGTTGTTCATCACCGACGACTCCACGGGCGACGAAGAAGAGCCTCAACTCCACAACCAATACAGCATCAGCTCAATTCAAGAAGCCCTAAAGGCAGTGATGGAAAAGGTTTGCAGAGAAGATCCGTCGTCTTCGGGCAGTCTTAAACGACAAAGGACCAATCATCACAAGAACATGAATATGGTTGAACATAGATCTTATTAA 882 48.07 MKEEGEWFQGFQEQFLMQHNDDGFGGGFDPTRDRLEPLIHPASYAGFFNRRNASSLQFPYDIGNSYVGIGQMGQGGSSPFGLQAELTKMTAQEIMDAKALAASKTHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIETLKSLRLRTLKAEITALGGRVKNVLFITDDSTGDEEEPQLHNQYSISSIQEALKAVMEKVCREDPSSSGSLKRQRTNHHKNMNMVEHRSY 293
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 7629837 7632502 - Sed0018767.1 Sed03g1198 706685
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1198 293 FunFam transcription factor bHLH30 96 159 - -
Sed03g1198 293 PANTHER TRANSCRIPTION FACTOR BHLH30 71 282 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1198 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 155 IPR036638 GO:0046983(InterPro)
Sed03g1198 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983(InterPro)
Sed03g1198 293 SMART finulus 107 156 IPR011598 GO:0046983(InterPro)
Sed03g1198 293 Gene3D - 96 156 IPR036638 GO:0046983(InterPro)
Sed03g1198 293 MobiDBLite consensus disorder prediction 267 293 - -
Sed03g1198 293 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Sed03g1198 293 CDD bHLH_AtAIG1_like 96 175 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1198 Sed-Chr3:7629837 Sed07g2054 Sed-Chr7:35700128 2.10E-82 dispersed
Sed03g1198 Sed-Chr3:7629837 Sed03g1199 Sed-Chr3:7629837 9.10E-163 tandem
Sed11g1583 Sed-Chr11:31337122 Sed03g1198 Sed-Chr3:7629837 1.50E-123 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37836 PF00010 HLH 9.90E-13 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1198 - - - 0.0