Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1199 ATGAAAGAGGAAGGAGAGTGGTTTCAAGGGTTCCAAGAGCAGTTTCTAATGCAACATAACGACGACGGTTTCGGAGGGGGATTCGACCCGACTCGAGACCGCCTCGAGCCGTTGATCCATCCAGCTTCTTACGCCGGCTTTTTCAATCGGAGAAATGCTTCTTCTCTGCAGTTTCCTTATGATATTGGTAATAGTTATGTAGGGATCGGGCAGATGGGTCAGGGTGGATCTTCCCCGTTTGGGCTGCAGGCCGAGCTGACCAAGATGACCGCTCAAGAAATCATGGACGCTAAAGCACTTGCAGCCTCAAAAACTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCCAAGTTAAGAAGTTTGCTTCCAAGTACCACAAAAACGGACAAGGCATCATTGCTTGCAGAAGTAATCCAACATGTGAAAGAGCTAAAACGACAGACGACATTGATAGCCGACGTAAGTCCTGTACCGACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATAAAAGCCTCCCTTTGTTGTGAGGACAGGTCCGATCTCCTCCCACAGATCATCGAAACCCTAAAATCCCTCCGCCTGAGAACCCTAAAAGCAGAGATCACAGCACTCGGTGGCCGCGTAAAGAACGTGTTGTTCATCACCGACGACTCCACGGGCGACGAAGAAGAGCCTCAACTCCACAACCAATACAGCATCAGCTCAATTCAAGAAGCCCTAAAGGCAGTGATGGAAAAGGTTTGCAGAGAAGATCCGTCGTCTTCGGGCAGTCTTAAACGACAAAGGACCAATCATCACAAGAACATGAATATGGTTGAACATAGATCTTATTAA 882 48.07 MKEEGEWFQGFQEQFLMQHNDDGFGGGFDPTRDRLEPLIHPASYAGFFNRRNASSLQFPYDIGNSYVGIGQMGQGGSSPFGLQAELTKMTAQEIMDAKALAASKTHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIETLKSLRLRTLKAEITALGGRVKNVLFITDDSTGDEEEPQLHNQYSISSIQEALKAVMEKVCREDPSSSGSLKRQRTNHHKNMNMVEHRSY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7629837 7632502 - Sed0018767.2 Sed03g1199 706686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1199 293 FunFam transcription factor bHLH30 96 159 - -
Sed03g1199 293 PANTHER TRANSCRIPTION FACTOR BHLH30 71 282 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1199 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 155 IPR036638 GO:0046983(InterPro)
Sed03g1199 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983(InterPro)
Sed03g1199 293 SMART finulus 107 156 IPR011598 GO:0046983(InterPro)
Sed03g1199 293 Gene3D - 96 156 IPR036638 GO:0046983(InterPro)
Sed03g1199 293 MobiDBLite consensus disorder prediction 267 293 - -
Sed03g1199 293 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Sed03g1199 293 CDD bHLH_AtAIG1_like 96 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1199 Sed-Chr3:7629837 Sed11g1583 Sed-Chr11:31337122 4.90E-124 dispersed
Sed03g1198 Sed-Chr3:7629837 Sed03g1199 Sed-Chr3:7629837 9.10E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37837 PF00010 HLH 9.90E-13 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1199 - - - 0.0