Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1214 ATGAATCTGAGAATTGTTGTATTATGGATCGTAGAGATCATCTTCATCCATGTAGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGTTTCTGCATTGAATGTAATGTTCAGTAGCTTAAAATCTCCATCACAACTCTCTGGTTGGAGTTCAAGTGGGGGTGACCCATGCGGCGATTCTTGGGAAGGAATCAAATGCTCAGGAGAATCCGTCACTGAAATAAGTTTATCAGACTATGGACTAAAAGGATCGATGGGTTACCAGCTCGCAAATTTGGTTTCTTTAGCCTACTTTGATTTGAGCAAGAACAGCCTCAGTGGCGAAATCCCCTACCAGCTTCCTCCCAATGCAATTCACATCGATTTTTCTGATAACAAATTCTCTGGTAGTGTGCCATATTCAATTTCTCAAATGGCTGATCTTCAATATTTAGATCTTAGTCATAACAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAATCTTACTAAACTCCAAAGGATGGATCTCTCATACAACAAAATTTCGGGAGACTTACCACAAAGTTTCACGAAGCTTTCAAACCTCGCCGTATTGCACATACAAGAAAATAAATTTACAGGCTCAATTAATGTTCTTGGTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGGTTCCTGACACTCTTGCTGATATTGATAATTTGGAAACTGTAGGAAACTCCTGGTCAACTGGACCAGCTCCTCCTCCCCCACCAGGCACAGTGGCCCCGATAAAAAGCTCGAAGAAAAGCGAGTCGGGCGGGAAATCATGGGGCGTGAGCATCATGGCGATAGCCGGAATAGCGATGGGAGTGTTAGCATTGGTCGCCATTGTGATCGGATTAATGGCGGCGTCAAGAAGGACTCCTCCTTCCCATTATCTAGACTCAGACTCAGAGCAACACAGATCCTTCACCCCACTCACATCCCAAGAGCTGGGCAAAGGCCACAGTTATGTAAACGATAGAAAATCATTCAACTCGGATGCCTCTCATGTTGACGTAAAGGCTATTCAGAGACCTCCCCCGCCGTCCTCCGACCCCGTGCAGTCCTTCAGCGATAACCAGTTTGCTACCCGGCTCAACTCTAGACGAAGCACTTCGGTTCGTGCCGTTGCTTACTCTTTGGCTGATTTGCAGAAGGCTACTAACAGTTTTTCTTCTGCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCTAAGTATGATGATGGCAAGGTATTAGCAGTAAAGAAGATAGATTCATCAGTGTTTCAAGGGAGGAGAACAGAGGAATTTTCAGAAGTAGTAGCAGTGATCTCAAAGCTTCACCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAACATGGACATAACATGCTGGTTTATGATTTTTTCATGAATGGTTCACTCCATGAGTTTCTACACATGTCTGATGACTTCAGCAAACCACTCACATGGAACACTCGAGTCAGAATCGCTTTGGGCACGGCTCGAGCTCTCGAGTACCTTCACGAAGCTTGTTCACCATCCATAGTTCACATGAACATTAAGTCCTCCAATATATTTCTTGATGCTGAACTCAATCCTCGCCTCTCAGACTATGGTTTGGCAACATTTTACAAGAATAGAAGCCAAAACCCCGGGGCTGGATACGATGCTCCTGAATGCATAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACCGGACGGATGCCTTATGACTCGTCAAAGATAAAGGTGGAACAAAGTCTAGTTCGGTGGGCTACCCCACAGCTCCATGACATAGATGCATTGGACAAAATGGTGGATCCTGCACTTCGAGGATTATACCCACCAAAGTCAGTTTCTAGATTTTCAGATATCATTGCTCTTTGTGTTCAATCAGAGCCTGAATTCCGGCCTCCCATGTCAGAGGTGGTGCAAGCCCTGGTAACTTTGGTTCAACGATCCAGTATGAATATGAGAGATGATCTTGGAAACTCTCGAAGAATGGATGATTATGACTATTGA 2082 43.9 MNLRIVVLWIVEIIFIHVVGVVSKTKAPDVSALNVMFSSLKSPSQLSGWSSSGGDPCGDSWEGIKCSGESVTEISLSDYGLKGSMGYQLANLVSLAYFDLSKNSLSGEIPYQLPPNAIHIDFSDNKFSGSVPYSISQMADLQYLDLSHNKLSNQLSDMFGNLTKLQRMDLSYNKISGDLPQSFTKLSNLAVLHIQENKFTGSINVLGDLPLDDLNVANNKFTGWVPDTLADIDNLETVGNSWSTGPAPPPPPGTVAPIKSSKKSESGGKSWGVSIMAIAGIAMGVLALVAIVIGLMAASRRTPPSHYLDSDSEQHRSFTPLTSQELGKGHSYVNDRKSFNSDASHVDVKAIQRPPPPSSDPVQSFSDNQFATRLNSRRSTSVRAVAYSLADLQKATNSFSSARLLGEGTIGRVYKAKYDDGKVLAVKKIDSSVFQGRRTEEFSEVVAVISKLHHTNITEVVGFCSEHGHNMLVYDFFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEACSPSIVHMNIKSSNIFLDAELNPRLSDYGLATFYKNRSQNPGAGYDAPECIKGSSYTMKSDIYSLGVVMLELLTGRMPYDSSKIKVEQSLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFSDIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7771222 7778906 + Sed0024542.1 Sed03g1214 706701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1214 693 Gene3D Transferase(Phosphotransferase) domain 1 477 690 - -
Sed03g1214 693 MobiDBLite consensus disorder prediction 303 338 - -
Sed03g1214 693 MobiDBLite consensus disorder prediction 314 338 - -
Sed03g1214 693 Gene3D Ribonuclease Inhibitor 26 253 IPR032675 -
Sed03g1214 693 Gene3D Phosphorylase Kinase; domain 1 362 476 - -
Sed03g1214 693 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Sed03g1214 693 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 477 681 - -
Sed03g1214 693 PANTHER LEUCINE RICH REPEAT KINASE 2 285 669 IPR051420 -
Sed03g1214 693 PRINTS Leucine-rich repeat signature 162 175 - -
Sed03g1214 693 PRINTS Leucine-rich repeat signature 141 154 - -
Sed03g1214 693 Pfam Protein kinase domain 401 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1214 693 MobiDBLite consensus disorder prediction 240 268 - -
Sed03g1214 693 ProSiteProfiles Protein kinase domain profile. 399 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1214 693 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 364 476 - -
Sed03g1214 693 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Sed03g1214 693 SUPERFAMILY L domain-like 28 237 - -
Sed03g1214 693 Pfam Leucine rich repeat 157 199 IPR001611 GO:0005515(InterPro)
Sed03g1214 693 SUPERFAMILY Protein kinase-like (PK-like) 379 667 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1214 Sed-Chr3:7771222 Sed11g1725 Sed-Chr11:32358988 1.80E-254 dispersed
Sed12g1390 Sed-Chr12:11201911 Sed03g1214 Sed-Chr3:7771222 1.40E-23 dispersed
Sed03g1214 Sed-Chr3:7771222 Sed01g1998 Sed-Chr1:14944669 3.70E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78887 PF00069 Pkinase 9.60E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1214 - - - 0.0