Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1296 ATGACTTCCTACTTCCATCATCGGGGCTTCGCCTTCATCGTCTTCTTTTTGCCGCTTATGATGCTAGGGATGACAACCAAACCGGTGTTCGCCATCTTTCGACCGACCCCTTGGCAGCTTGCCCATGCTACCTTTTATGGCGATGAGACAGCATCTGAAACAATGGGGGGAGCTTGTGGATATGGAAACTTGTTCACAAACGGCTATGGCGTAGACACTGTGGCTCTAAGCTCCACACTCTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCATGCAATCCAAAGCTTGTTACCCTACTGTCGCTTTCACAACCGTGACCGCAACCAACCTTTGCCCGCCAAATTGGGCCAAACCATCCGACAATGGCGGGTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCAAAACCCGCCTTTATGAAGATAGCAAACTGGAAGGCCGGGATCATCCCGGTCGCATACCGACGAGTCCCATGCGTAAAAAAAGATGCCCTTCGCTTCACATTTCAAGGAAATGGGTACTGGCTTTTGGTGTACGTGATGAACGTCGGGGGCGGCGGGGACGTGTCGGGAATGTGGGTGAAAGGAAGCAAGACGGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCATCGTTGGTTGGACAATCTTTGTCTTTTAGAGTCACATCCTACACCACCAAAGAGACCATCACGGCTTGGAATGTTGCCCCTTCTAATTGGAACTTTGGCTTGACCTACAAAGCCAACCTCAACTTTCGTTGA 795 49.81 MTSYFHHRGFAFIVFFLPLMMLGMTTKPVFAIFRPTPWQLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCMQSKACYPTVAFTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCVKKDALRFTFQGNGYWLLVYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSSLVGQSLSFRVTSYTTKETITAWNVAPSNWNFGLTYKANLNFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8275874 8277576 - Sed0020065.1 Sed03g1296 706783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1296 264 CDD DPBB_EXPA_N 37 164 - -
Sed03g1296 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Sed03g1296 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Sed03g1296 264 Gene3D - 25 164 IPR036908 -
Sed03g1296 264 SMART dpbb_1 73 159 IPR007112 -
Sed03g1296 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 Gene3D - 169 264 IPR036749 -
Sed03g1296 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Sed03g1296 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Sed03g1296 264 SUPERFAMILY PHL pollen allergen 169 258 IPR036749 -
Sed03g1296 264 PANTHER EXPANSIN-A15 25 259 IPR002963 GO:0009664(InterPro)
Sed03g1296 264 Pfam Lytic transglycolase 73 159 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1296 Sed-Chr3:8275874 Sed05g0853 Sed-Chr5:6796719 1.20E-108 dispersed
Sed03g1296 Sed-Chr3:8275874 Sed07g2495 Sed-Chr7:40621356 3.10E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1296 - - - 0.0