Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1297 ATGGCTGGTAGCATTTTTGAATCCTTGTCATTTGGGTCTCAACATGGTCAAGCTCATCAATCTTTGCCATTTTCCTCTGGAAACACATCGTTGAAGTTCTTGCTCTTGCATGGTTATTTAGATATTTGGGTCAATAGAGCTAAAAACCTTCCCAATATGGATGGGGTTCACAAGACTCTTGGAAACGTGTTTTCAAAAGTGTCTTTAATGGGTTATAGTGATGGCAAAAAGTCTGCAAAAATGACTAGTGATCCCTATGTTACCATTTCCATATCTGGTGCTGTCTTAGGAAGAACTTTTGTGATTGATGATAATGAGAATCCTGTTTGGTTGCAACATTTTAATGTCCCTGTTGCTCACTATGGTGTTGAAGTGCACTTTGTAGTTAAAGATCATGATGTTGTGGGATCTGAAATCATGGGTGTTGTTGCAATTCCTGTGGAGGAATTAACCTCTGGAGCCTTGGTTGAGGGTACCTACCCTATACTTAGTGGTAGTGGGAAGCCCTGCAAGGCCGGGGCGGTCTTGAGCTTGTCGATTCAGTATACCCCGGCTGACCAGGCCGCCATTTTCCACGGTGGAATGTATGCATCTCCTGATCATCAGGGAGTTTCGGGCACTTATTTTCCTCTTAGGAAAGGGTGTAAGGTTACATTGTACCAAGATGCTCATGTTGAGGATCAATGTCTTCCTACTGATTTTAGGCTTAGTGGGGGGGTTGAATATGAACATAGGAGCTGCTGGGACGACATTGCTGAATCGATTAATCAAGCTCGTCGTTTGATCTATATTACGGGCTGGTCAGTATACTACAATGTTGGACTGGTTAGGGATGGAAAGGGAAAAGATTGTATATTAGGGGACCTTCTTAAAGCTAAGTCTCAAGAAGGAGTAAGAGTGTTGCTTCTGATATGGGATGATCCAACTTCAACAAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAGTGATGAGGAGACTCGTCGTTTTTTCAAGCACTCTTCGGTCCAAGTGATTTTATGCCCACGATCTGGTGGAAAAGGTCATAGTTGGATTAAAACACAGGAAGCTGGAACCATCTATACCCATCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGCAATTACAAAAGAAAAATTGTAGCTTTTGTGGGAGGTCTCGATTTATGTTTGGGCCGATATGATTCTTCGAAACATCCTCTTTTCCGGACATTGCAAACGACGCACGTGAATGACTTCCACAACCCTAATTTTACGGGACTGACTAATGGTTGTCCAAGAGAGCCATGGCATGATTTGCACTCTAAGATTGATGGTCCAGCAGCCTACGACGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCTAAACCTAAAGGGATTAAAAAGCTAAAAAAATTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAATTTTTGGAAATTGATTATGCTGCTCAAGTTTGTACCAATGATTCAGAAGGTTGGAATGTCCAGATTTTTCGCTCCATCGATTCCAATTCCGTGAAAGGATTTCCTAAAAACCCAAAAGATGCTATCAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGATATGAGTATACATTCAGCATATGTTAGTGCGATTCGTGCTGCCCAACGCTTCATTTATATTGAAAACCAATACTTCCTTGGGTCATCTTTTAATTGGGGTGCTCACAGAGACTTGGGGGCTAATAACTTAATACCAATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTCTCGGCATATGTGGTTATCCCAATGTGGCCGGAAGGTGTTCCTACAAGCGCTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGAACAATGCAAATGATGTATGATATGATATATACGGCTTTAGAGGAGGTTGGACTTCATGAAACATATGAGCCTCAAGACTACTTGAATTTCTTTTGCCTTGGTAACCGTGAAGTGCTCGATGTGGGAGACGGTGTTGAAGCCGTAAATGTAGAGAAGAATGCTCAATCCCTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCACTCTAAAGGGATGATAGTAGATGATGAGTATGTCTTATTGGGATCAGCAAATATTAATCAGAGGTCTCTTGAAGGAACCAGAGATACTGAAATAGCAATGGGCGCATATCAGCCTCATCATACATGGTCGTCAAGCAAACACTCAAGCCCATGTGGCCAGGTTTACGGATACAGAATGTCATTATGGGCGGAGCACACAGGAACAATGGAAGAATGTTTTGAGAGACCAGAGAGTATTGAATGTGTAAGAGAAATCAGATCATTGGGTGAGAGAAATTGGAAACAATTTGTAGCTGAGGAAGTGACTGAAATGACAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTCACCCATCTTCCTGGTTGTGAAACATTTCCAGACCTTGGTGGCAACATAATGGGAACATTTGTTGCCATCCAAGAGAACCTTACAATTTGA 2547 41.34 MAGSIFESLSFGSQHGQAHQSLPFSSGNTSLKFLLLHGYLDIWVNRAKNLPNMDGVHKTLGNVFSKVSLMGYSDGKKSAKMTSDPYVTISISGAVLGRTFVIDDNENPVWLQHFNVPVAHYGVEVHFVVKDHDVVGSEIMGVVAIPVEELTSGALVEGTYPILSGSGKPCKAGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGCKVTLYQDAHVEDQCLPTDFRLSGGVEYEHRSCWDDIAESINQARRLIYITGWSVYYNVGLVRDGKGKDCILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTSDEETRRFFKHSSVQVILCPRSGGKGHSWIKTQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDSSKHPLFRTLQTTHVNDFHNPNFTGLTNGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASKPKGIKKLKKLHEDVLLKIERIPEFLEIDYAAQVCTNDSEGWNVQIFRSIDSNSVKGFPKNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSFNWGAHRDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSAPIQRILFWQSRTMQMMYDMIYTALEEVGLHETYEPQDYLNFFCLGNREVLDVGDGVEAVNVEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPHHTWSSSKHSSPCGQVYGYRMSLWAEHTGTMEECFERPESIECVREIRSLGERNWKQFVAEEVTEMTSHLLKYPLQVDPTGKVTHLPGCETFPDLGGNIMGTFVAIQENLTI 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8285576 8294272 + Sed0027014.1 Sed03g1297 706784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1297 848 CDD C2_plant_PLD 34 183 - -
Sed03g1297 848 PANTHER PHOSPHOLIPASE D 35 836 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed03g1297 848 Gene3D Endonuclease Chain A 505 750 - -
Sed03g1297 848 Gene3D Endonuclease Chain A 236 478 - -
Sed03g1297 848 FunFam Phospholipase D delta 238 475 - -
Sed03g1297 848 SUPERFAMILY Phospholipase D/nuclease 530 780 - -
Sed03g1297 848 SMART C2_3c 39 159 IPR000008 -
Sed03g1297 848 SMART pld_4 693 720 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 SMART pld_4 361 396 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 Pfam Phospholipase D Active site motif 695 720 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 Pfam Phospholipase D Active site motif 363 393 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 184 IPR035892 -
Sed03g1297 848 SUPERFAMILY Phospholipase D/nuclease 202 461 - -
Sed03g1297 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 ProSiteProfiles C2 domain profile. 14 160 IPR000008 -
Sed03g1297 848 FunFam Phospholipase D 509 739 - -
Sed03g1297 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 361 396 IPR001736 GO:0003824(InterPro)
Sed03g1297 848 PIRSF PLD_plant 25 848 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed03g1297 848 Pfam Phospholipase D C terminal 768 838 IPR024632 -
Sed03g1297 848 Gene3D C2 domain 25 183 IPR035892 -
Sed03g1297 848 Pfam C2 domain 38 161 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1297 Sed-Chr3:8285576 Sed04g0716 Sed-Chr4:5819666 0.00E+00 dispersed
Sed03g1297 Sed-Chr3:8285576 Sed04g0715 Sed-Chr4:5793597 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1297 K01115 - csv:101208016 1513.05