Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1297 | ATGGCTGGTAGCATTTTTGAATCCTTGTCATTTGGGTCTCAACATGGTCAAGCTCATCAATCTTTGCCATTTTCCTCTGGAAACACATCGTTGAAGTTCTTGCTCTTGCATGGTTATTTAGATATTTGGGTCAATAGAGCTAAAAACCTTCCCAATATGGATGGGGTTCACAAGACTCTTGGAAACGTGTTTTCAAAAGTGTCTTTAATGGGTTATAGTGATGGCAAAAAGTCTGCAAAAATGACTAGTGATCCCTATGTTACCATTTCCATATCTGGTGCTGTCTTAGGAAGAACTTTTGTGATTGATGATAATGAGAATCCTGTTTGGTTGCAACATTTTAATGTCCCTGTTGCTCACTATGGTGTTGAAGTGCACTTTGTAGTTAAAGATCATGATGTTGTGGGATCTGAAATCATGGGTGTTGTTGCAATTCCTGTGGAGGAATTAACCTCTGGAGCCTTGGTTGAGGGTACCTACCCTATACTTAGTGGTAGTGGGAAGCCCTGCAAGGCCGGGGCGGTCTTGAGCTTGTCGATTCAGTATACCCCGGCTGACCAGGCCGCCATTTTCCACGGTGGAATGTATGCATCTCCTGATCATCAGGGAGTTTCGGGCACTTATTTTCCTCTTAGGAAAGGGTGTAAGGTTACATTGTACCAAGATGCTCATGTTGAGGATCAATGTCTTCCTACTGATTTTAGGCTTAGTGGGGGGGTTGAATATGAACATAGGAGCTGCTGGGACGACATTGCTGAATCGATTAATCAAGCTCGTCGTTTGATCTATATTACGGGCTGGTCAGTATACTACAATGTTGGACTGGTTAGGGATGGAAAGGGAAAAGATTGTATATTAGGGGACCTTCTTAAAGCTAAGTCTCAAGAAGGAGTAAGAGTGTTGCTTCTGATATGGGATGATCCAACTTCAACAAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAGTGATGAGGAGACTCGTCGTTTTTTCAAGCACTCTTCGGTCCAAGTGATTTTATGCCCACGATCTGGTGGAAAAGGTCATAGTTGGATTAAAACACAGGAAGCTGGAACCATCTATACCCATCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGCAATTACAAAAGAAAAATTGTAGCTTTTGTGGGAGGTCTCGATTTATGTTTGGGCCGATATGATTCTTCGAAACATCCTCTTTTCCGGACATTGCAAACGACGCACGTGAATGACTTCCACAACCCTAATTTTACGGGACTGACTAATGGTTGTCCAAGAGAGCCATGGCATGATTTGCACTCTAAGATTGATGGTCCAGCAGCCTACGACGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCTAAACCTAAAGGGATTAAAAAGCTAAAAAAATTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAATTTTTGGAAATTGATTATGCTGCTCAAGTTTGTACCAATGATTCAGAAGGTTGGAATGTCCAGATTTTTCGCTCCATCGATTCCAATTCCGTGAAAGGATTTCCTAAAAACCCAAAAGATGCTATCAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGATATGAGTATACATTCAGCATATGTTAGTGCGATTCGTGCTGCCCAACGCTTCATTTATATTGAAAACCAATACTTCCTTGGGTCATCTTTTAATTGGGGTGCTCACAGAGACTTGGGGGCTAATAACTTAATACCAATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTCTCGGCATATGTGGTTATCCCAATGTGGCCGGAAGGTGTTCCTACAAGCGCTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGAACAATGCAAATGATGTATGATATGATATATACGGCTTTAGAGGAGGTTGGACTTCATGAAACATATGAGCCTCAAGACTACTTGAATTTCTTTTGCCTTGGTAACCGTGAAGTGCTCGATGTGGGAGACGGTGTTGAAGCCGTAAATGTAGAGAAGAATGCTCAATCCCTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCACTCTAAAGGGATGATAGTAGATGATGAGTATGTCTTATTGGGATCAGCAAATATTAATCAGAGGTCTCTTGAAGGAACCAGAGATACTGAAATAGCAATGGGCGCATATCAGCCTCATCATACATGGTCGTCAAGCAAACACTCAAGCCCATGTGGCCAGGTTTACGGATACAGAATGTCATTATGGGCGGAGCACACAGGAACAATGGAAGAATGTTTTGAGAGACCAGAGAGTATTGAATGTGTAAGAGAAATCAGATCATTGGGTGAGAGAAATTGGAAACAATTTGTAGCTGAGGAAGTGACTGAAATGACAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTCACCCATCTTCCTGGTTGTGAAACATTTCCAGACCTTGGTGGCAACATAATGGGAACATTTGTTGCCATCCAAGAGAACCTTACAATTTGA | 2547 | 41.34 | MAGSIFESLSFGSQHGQAHQSLPFSSGNTSLKFLLLHGYLDIWVNRAKNLPNMDGVHKTLGNVFSKVSLMGYSDGKKSAKMTSDPYVTISISGAVLGRTFVIDDNENPVWLQHFNVPVAHYGVEVHFVVKDHDVVGSEIMGVVAIPVEELTSGALVEGTYPILSGSGKPCKAGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGCKVTLYQDAHVEDQCLPTDFRLSGGVEYEHRSCWDDIAESINQARRLIYITGWSVYYNVGLVRDGKGKDCILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTSDEETRRFFKHSSVQVILCPRSGGKGHSWIKTQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDSSKHPLFRTLQTTHVNDFHNPNFTGLTNGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASKPKGIKKLKKLHEDVLLKIERIPEFLEIDYAAQVCTNDSEGWNVQIFRSIDSNSVKGFPKNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSFNWGAHRDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSAPIQRILFWQSRTMQMMYDMIYTALEEVGLHETYEPQDYLNFFCLGNREVLDVGDGVEAVNVEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPHHTWSSSKHSSPCGQVYGYRMSLWAEHTGTMEECFERPESIECVREIRSLGERNWKQFVAEEVTEMTSHLLKYPLQVDPTGKVTHLPGCETFPDLGGNIMGTFVAIQENLTI | 848 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8285576 | 8294272 | + | Sed0027014.1 | Sed03g1297 | 706784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1297 | 848 | CDD | C2_plant_PLD | 34 | 183 | - | - | |
Sed03g1297 | 848 | PANTHER | PHOSPHOLIPASE D | 35 | 836 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) | |
Sed03g1297 | 848 | Gene3D | Endonuclease Chain A | 505 | 750 | - | - | |
Sed03g1297 | 848 | Gene3D | Endonuclease Chain A | 236 | 478 | - | - | |
Sed03g1297 | 848 | FunFam | Phospholipase D delta | 238 | 475 | - | - | |
Sed03g1297 | 848 | SUPERFAMILY | Phospholipase D/nuclease | 530 | 780 | - | - | |
Sed03g1297 | 848 | SMART | C2_3c | 39 | 159 | IPR000008 | - | |
Sed03g1297 | 848 | SMART | pld_4 | 693 | 720 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | SMART | pld_4 | 361 | 396 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | Pfam | Phospholipase D Active site motif | 695 | 720 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | Pfam | Phospholipase D Active site motif | 363 | 393 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 36 | 184 | IPR035892 | - | |
Sed03g1297 | 848 | SUPERFAMILY | Phospholipase D/nuclease | 202 | 461 | - | - | |
Sed03g1297 | 848 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 693 | 720 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | ProSiteProfiles | C2 domain profile. | 14 | 160 | IPR000008 | - | |
Sed03g1297 | 848 | FunFam | Phospholipase D | 509 | 739 | - | - | |
Sed03g1297 | 848 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 361 | 396 | IPR001736 | GO:0003824(InterPro) | |
Sed03g1297 | 848 | PIRSF | PLD_plant | 25 | 848 | IPR011402 | GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro) | |
Sed03g1297 | 848 | Pfam | Phospholipase D C terminal | 768 | 838 | IPR024632 | - | |
Sed03g1297 | 848 | Gene3D | C2 domain | 25 | 183 | IPR035892 | - | |
Sed03g1297 | 848 | Pfam | C2 domain | 38 | 161 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1297 | Sed-Chr3:8285576 | Sed04g0716 | Sed-Chr4:5819666 | 0.00E+00 | dispersed | |
Sed03g1297 | Sed-Chr3:8285576 | Sed04g0715 | Sed-Chr4:5793597 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1297 | K01115 | - | csv:101208016 | 1513.05 |