Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1303 ATGGCGTCTTCTTCTTCTTCAGTCAGTAGCAGCAACTACGATATTCCATGGGTGGAGAAGTTCAGGCCCAGCAAGGTCGCTGACATTGTGGGCAACGAAGACGCAGTTTCAAGGCTCCAAGTGATTGCTCGCGACGGCAATATGCCCAACCTCATTTTATCTGGTCCTCCAGGAACTGGGAAGACGACTAGTATTTTGGCTCTTGCCCACGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTTTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTACCTCCTGGTCGACACAAAGTGGTTATATTGGATGAAGCTGACAGTATGACAACTGGAGCACAACAAGCTTTGAGGCGTACGATGGAAATATATTCAAACACGACACGTTTTGCCCTTGCATGTAACACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACTGATCAAGAGATTCTTGGTCGCCTCATGGTGGTGCTTCAGGAAGAAAAGGTACCCTATGTCCCAGAAGGCCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAGGCGTTGAATAATCTGCAAGCTACATACAGTGGATTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGCGATCAACCTCATCCGCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGGAGGTAAATTTGATGATGCTTGTGCAGGTCTCAAGCAACTCTATGACTTGGGCTATTCTCCAACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGACGGTGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAAACTGCCAAAGCTCCTTAA 1002 44.51 MASSSSSVSSSNYDIPWVEKFRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLGGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8338948 8345020 - Sed0016995.2 Sed03g1303 706790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1303 333 CDD AAA 30 167 - -
Sed03g1303 333 FunFam replication factor C subunit 2 237 329 - -
Sed03g1303 333 FunFam Replication factor C subunit 4 9 172 - -
Sed03g1303 333 CDD HLD_clamp_RFC 172 234 IPR047854 -
Sed03g1303 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed03g1303 333 Gene3D - 173 236 - -
Sed03g1303 333 FunFam Replication factor C subunit 4 173 236 - -
Sed03g1303 333 Pfam ATPase family associated with various cellular activities (AAA) 51 169 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g1303 333 Gene3D - 8 172 IPR027417 -
Sed03g1303 333 Gene3D - 237 329 - -
Sed03g1303 333 SMART AAA_5 47 179 IPR003593 GO:0016887(InterPro)
Sed03g1303 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Sed03g1303 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 16 326 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Sed03g1303 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1303 Sed-Chr3:8338948 Sed06g0991 Sed-Chr6:14073763 1.30E-51 dispersed
Sed03g1302 Sed-Chr3:8338948 Sed03g1303 Sed-Chr3:8338948 2.20E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1303 K10755 - csv:101208984 634.795