Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1305 ATGGCCATCGCCGCCGTCCTTTTCCGATCATATTCTGTTTTTGTCCTAATTATTCTTCTTTTCCAGCTGATCTCCGCCGCCACCACGGGATCGTACTCCACCGTAGAGTTTCTGCCAGGATTCTCAGGTCCTCTTCCCTTTCAACTCGAAACCGGGTACGTGGGTTTGGGAGATTGGGATGAAATTCAGATATTTCACTATTTTATCAAATCTGAAGGAAATCCCCAAACTGACCCTCTCATTCTTTGGCTCACGGGTGGTCCTGGCTGCTCTGCTCTATCTGGACTTGCCTTCGAAATTGGTCCAATAAATTTTAAGGAAGAGCCATACAATGGGAGCCTACCTCAACTATTATTAAATCCCGACTCATGGACAAAGAAATCTAGTATAATATTTGTAGATATGCCAGTTGGCACTGGATTTTCGTACGATAAAACTTCTACGGTTAAGATCGGAGATTCTAGTCAAATTCGCCATTGTATCCAATTTTTGACAAAGTGGCTGGTTGATCATCCAGAATTTATAACGAATCCCTTCTATGTGGCTGGAGATTCATATTCCGGCATGATTGTTCCGGTTGTTGCTCACGAAATTTTAGAAGGAAACAAACATGTTTTTCCATCTATAAATTTTCAGGGGTACATATTGGGAAATCCTGGTACTATTCGTGATTCGGCTACAAATTTTGAAGTTCCTTTTGCTCATAGGATGACCCTAATCTCAGATGAATTGTACGAGTCGTTAAAAACTAGTTGCAAAGGAAATTATGCGAACATCGATGAAGCAAATGTAGAGTGCTTAAGACATTACGAAACATATGAAAAGTGTATTTCGAAAGTCGAGGAAGCATGTATTTTAGTTCCAAAATGTCAAAATCTACCAAATATATCTGGTCGAAGATCTCTCTACAACAAGGAGTTGCTTCACCTAACTAAATCACCAATCTTGACCCCCATTCAATTCAAATACGCACTATCTCATTATTGGACTAACGATCATCAAGTTCAAAAGGCACTCCACATACATGAGGGAAGCATTGGAGAATGGATAAGATGCATGGATAATGAGAACTATACATTTGAAATCGACAGTGTTTTTCCTTATCATGTGAACCTTAGTACTAAAGGTTATCGTTCTTTGATCTACAGCGGAGATCATGATATGATTGTGTCGCATATGGATACTCAAGCTTGGATTAAAGCTTTAAATTACTCGATTGTCGATGATTGGAGACCATGGTTGTTCTTGGATCAAGTAGTTGGATATACGAGATCTTATGCAAATAAAATGACATTTGCAACCATAAAAGGTGGAGGGCATACAACAGAATACAAACGAAAAGAAAGCTACATAATGTTTAGTAGATGGATATCACGAGAATCCTTGTAA 1389 39.09 MAIAAVLFRSYSVFVLIILLFQLISAATTGSYSTVEFLPGFSGPLPFQLETGYVGLGDWDEIQIFHYFIKSEGNPQTDPLILWLTGGPGCSALSGLAFEIGPINFKEEPYNGSLPQLLLNPDSWTKKSSIIFVDMPVGTGFSYDKTSTVKIGDSSQIRHCIQFLTKWLVDHPEFITNPFYVAGDSYSGMIVPVVAHEILEGNKHVFPSINFQGYILGNPGTIRDSATNFEVPFAHRMTLISDELYESLKTSCKGNYANIDEANVECLRHYETYEKCISKVEEACILVPKCQNLPNISGRRSLYNKELLHLTKSPILTPIQFKYALSHYWTNDHQVQKALHIHEGSIGEWIRCMDNENYTFEIDSVFPYHVNLSTKGYRSLIYSGDHDMIVSHMDTQAWIKALNYSIVDDWRPWLFLDQVVGYTRSYANKMTFATIKGGGHTTEYKRKESYIMFSRWISRESL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8374343 8383830 + Sed0000239.1 Sed03g1305 706792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1305 462 FunFam Serine carboxypeptidase-like 11 29 462 - -
Sed03g1305 462 Pfam Serine carboxypeptidase 39 458 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed03g1305 462 SUPERFAMILY alpha/beta-Hydrolases 35 460 IPR029058 -
Sed03g1305 462 Gene3D alpha/beta hydrolase 36 462 IPR029058 -
Sed03g1305 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed03g1305 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed03g1305 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed03g1305 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed03g1305 462 FunFam Carboxypeptidase 319 462 - -
Sed03g1305 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 456 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1305 Sed-Chr3:8374343 Sed07g0503 Sed-Chr7:3802612 9.80E-95 dispersed
Sed03g1305 Sed-Chr3:8374343 Sed13g1817 Sed-Chr13:23125226 5.40E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1305 K16296 - csv:101207623 588.186