Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1311 ATGTCCGGAACAAGGTATGGACCAATATTCAGAACGAGTTTGGTTGGAAGACCACTGATTGTCTCAACCGACTCCGACTTGAATTACTTTATCTTTCAACAAGAGGGACAATTATTCCAGAGCTGGTATCCAGATACCTTCACCGAGATATTTGGAAAACAAAATGTTGGTTCGTTGCACGGTTTCATTTATAAATATCTGAAAAACATGGTCCTTCATCTTTTTGGCCCTGAAAGTCTCAGGAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTCTTGACTCAGTTGAATTGAAGGATAATACTGCAAGTATGATTTTTGATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCAGAGAATTTGAGAGAGAATTTTGTTGCATTCATACAGGGCTTGATCTCTTTTCCTCTAAATCTTCCCGGAACTGCTTATAACAAATGCTTACAGGGCAGGAAAAGAGCGATGAGTATGCTGAAAAACATGTTACAAGAAAGGCGAGCAAATCCAAGGAAACAACAAATAGATTTTTTCGATTTTGTTCTCGAAGAACTGGCAAAAGATGGAACTCTTCTCACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCGAGCTTCGAAACTACTTCACTTGCTATCACTGCTGCCATTAAATTTCTTCTCAACAATCCTCATGTTTTGGAGGAGCTGACGGCTGAACATGAGGGAATATTGAAAGCAAGGGAAAATCCAGATTCTGGGCTTACATGGAGAGAATACAAGTCTATGACATTCACATTTCAGTTCATCAATGAAACTGTGAGATTGGCAAATATTGTTCCGGGAATTTTTCGAAAAGCACTGAGAGATATCCAGTTCAAGGGATATACCATTCCAGCAGGGTGGGCTGTTATGGTCTGCCCTCCAGCCGTACACTTAAATCCAGAAAAGTACGCCGATCCCCTCGCTTTTAATCCGTGGCGGTGGGAGAAATCCGAACTGAATGGAGCCTCTAAACATTTCATGGCTTTTGGTGGGGGCATGAGATTCTGTGTTGGTACAGATTTTACCAAAGTTCAAATGGCTGTGTTTCTCCATTGCCTGGTTACGAAGTACAGGTTCAAAGCAATCAAAGGAGGCAATATCGTCCGAACTCCAGGTTTGCAGTTTCCCGACGGCTTTCACGTTCAAATCATGGAGAAATAG 1230 41.14 MSGTRYGPIFRTSLVGRPLIVSTDSDLNYFIFQQEGQLFQSWYPDTFTEIFGKQNVGSLHGFIYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSLDSVELKDNTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNLPGTAYNKCLQGRKRAMSMLKNMLQERRANPRKQQIDFFDFVLEELAKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKARENPDSGLTWREYKSMTFTFQFINETVRLANIVPGIFRKALRDIQFKGYTIPAGWAVMVCPPAVHLNPEKYADPLAFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFHVQIMEK 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8403634 8408298 - Sed0006334.1 Sed03g1311 706798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1311 409 PANTHER CYTOCHROME P450 26 4 380 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Sed03g1311 409 PRINTS E-class P450 group I signature 208 225 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 359 382 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 315 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 228 254 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 3 22 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 349 359 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS E-class P450 group I signature 275 293 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 352 361 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed03g1311 409 CDD CYP90-like 5 406 - -
Sed03g1311 409 FunFam Cytochrome P450 family protein 2 408 - -
Sed03g1311 409 Gene3D Cytochrome P450 2 408 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 SUPERFAMILY Cytochrome P450 5 405 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 Pfam Cytochrome P450 5 392 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS P450 superfamily signature 219 236 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS P450 superfamily signature 350 359 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS P450 superfamily signature 276 287 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g1311 409 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1311 Sed-Chr3:8403634 Sed07g0150 Sed-Chr7:1343113 1.40E-100 dispersed
Sed03g1311 Sed-Chr3:8403634 Sed14g1163 Sed-Chr14:20979121 3.50E-64 transposed
Sed03g1311 Sed-Chr3:8403634 Sed07g2562 Sed-Chr7:41160663 3.50E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1311 - - - 0.0