Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1326 ATGGGTAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGCCCTAGCCCAAGAACATTCTTCTCAGCAATGTTAGGGGAGAGTGTTGGTTCTAGACCTGCAATGGATACTACTACCATCAGTGATAAAACCGAAGAGCTTTTTCTCTGGCCTCGAGAACATATGGTATTGGAAAACACTGCTGCAAGAGGCGGGATCCCGGGTATCGATTCTGGAGACCGGTCAATGGATTTAGGTTTGTTCTCGGAGCAGAAATTCCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCGAGATTGAACACGGAGAGCATTCGATCCACTGATCACTCTTTGAATTCCGATGTCAAGTCTCCTTACTTGACCATACCACCCGGTCTCAGTCCAACCACATTGTTAGATTCACCAGTTTTTCTTTCGAATTCACTGGCTCAGCAATCCCCCACAACTGGAAAGTTCCCATTTTTGCCGAATGTTAGTTACCGAAGCTCGACGATGACGTCGGAGATCAGCAATAAAGGCAGCGAAAATCCATTTGACGATAACAGTATGTCATTTGCATTCAGACCCAGTGTGGAATCAGGACCCTCCTTTTTTCATAGTGCAACAAGCAAAACAACTTCTGCTACTATTGTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCATGTTCAGAAAATTCTTTTCAAACTCATCTTGTAGAACCACCTCTGTTCTTACCCCAAAGTAGAATCAGTCATCATCCTCAAATGGGAGGACTCTCGACATCATGTGCGGAAAGGGACGATGAGGGTAAGACCGTGTCCGACGATCAAAGACCCTTTGATTCTTTGTGTGATGGTGGTGAACATTCTTCCCCACTCGACGACCAACCGGACGGAGGGGAGCAAAGAGGCAGTGGAGAATCTATGGCCGGTGGTGATTACGGTGCTCCTTCAGAGGATGCATATAACTGGAGAAAATATGGACAAAAACAGGTAAAAGGAAGTGAGTACCCGCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTTGAGCGATCTCACGAGGGCCACATAACAGAGATCATCTATAAAGGAGCACATAACCATCCGAAGCCGTCACCGAACCGTCGAGCATTAATCGGACCTTCTGATCAAGCGGGGCAACAGAGTGCTGCAGGACCCCAGTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGAGGCATGAGAGCCTTGAAGTGACTTCTTCAGCATCTTTGGATCCTGAATATGGAAATCAGCCTAACCCTTTACAGGTTCAAAATGGTAGTCATATCGAAACAGTTGAAGCCATTGCCGCCTCATCCACATTCTCTAATGATGAAGATGAAGACGATAGGGGGACACTTGGTAGTATAACATTGAGGTATGAGGGGGAAGGAGATGAATCCGAGTCTAAGAAAAGGAAACTTGATGCTTATGTAACAGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTCCAGACTACCAGTGAAGTGGATATCCTGGACGATGGCTATCGTTGGCGTAAATATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAATGCACGAACCCCAACTGCACAGTGAGGAAACATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTGATCACAACATACGAAGGAAAGCACAATCACGACGTTCCTGCTGCTCGCAACAGCAGCCACATCAGCTCTGGTACATCATCCAGTCCAGCAATCCAAACTCATGTACACATGACAGGGCCATCCCAGGCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCCATGCTGCAAGACAGCAAATGGGCTTCTCTTTCGGAATGAACCAACCCGGACTCGGAAATCTGGCAATGGCAGCACCCGGGCAAGTCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAACACACCATGTTAATGAAATGGGTTTCTTGTTACCTAAAGGAGAACCCAAAGTAGAACCTACATCTGATCTTGGCTTGAACTTTTACAATGGTTCAGCTGTGTATCACCAAATTATGAGTAGGCTTCCACTTGAACCTGAGATGTGA 2163 46.69 MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGESVGSRPAMDTTTISDKTEELFLWPREHMVLENTAARGGIPGIDSGDRSMDLGLFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSYRSSTMTSEISNKGSENPFDDNSMSFAFRPSVESGPSFFHSATSKTTSATIVPQSCPRIEVPVPCSENSFQTHLVEPPLFLPQSRISHHPQMGGLSTSCAERDDEGKTVSDDQRPFDSLCDGGEHSSPLDDQPDGGEQRGSGESMAGGDYGAPSEDAYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRALIGPSDQAGQQSAAGPQWEDSQKGIPTGAPDWRHESLEVTSSASLDPEYGNQPNPLQVQNGSHIETVEAIAASSTFSNDEDEDDRGTLGSITLRYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPNCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSSPAIQTHVHMTGPSQAQNTIPRFERPAFGHAARQQMGFSFGMNQPGLGNLAMAAPGQVKLPVLPMHPYLAQTHHVNEMGFLLPKGEPKVEPTSDLGLNFYNGSAVYHQIMSRLPLEPEM 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8471473 8475673 - Sed0001427.1 Sed03g1326 706813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1326 720 SUPERFAMILY WRKY DNA-binding domain 519 587 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 Gene3D WRKY domain 514 580 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 ProSiteProfiles WRKY domain profile. 522 587 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 FunFam WRKY transcription factor 33 514 580 - -
Sed03g1326 720 Gene3D WRKY domain 317 383 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 MobiDBLite consensus disorder prediction 392 406 - -
Sed03g1326 720 MobiDBLite consensus disorder prediction 269 288 - -
Sed03g1326 720 FunFam WRKY transcription factor 313 383 - -
Sed03g1326 720 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 240 609 IPR044810 GO:0003700(InterPro)
Sed03g1326 720 ProSiteProfiles WRKY domain profile. 324 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 MobiDBLite consensus disorder prediction 581 603 - -
Sed03g1326 720 MobiDBLite consensus disorder prediction 373 420 - -
Sed03g1326 720 Pfam WRKY DNA -binding domain 528 585 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 Pfam WRKY DNA -binding domain 324 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 SMART WRKY_cls 323 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 SMART WRKY_cls 527 586 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1326 720 MobiDBLite consensus disorder prediction 253 327 - -
Sed03g1326 720 MobiDBLite consensus disorder prediction 589 603 - -
Sed03g1326 720 SUPERFAMILY WRKY DNA-binding domain 322 382 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1205 Sed-Chr1:8994775 Sed03g1326 Sed-Chr3:8471473 7.30E-68 dispersed
Sed03g1326 Sed-Chr3:8471473 Sed03g1367 Sed-Chr3:8701543 1.20E-78 dispersed
Sed03g1326 Sed-Chr3:8471473 Sed03g1327 Sed-Chr3:8471473 0.00E+00 tandem
Sed08g1210 Sed-Chr8:24995717 Sed03g1326 Sed-Chr3:8471473 1.40E-61 transposed
Sed03g1326 Sed-Chr3:8471473 Sed08g2870 Sed-Chr8:39875708 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37846 PF03106 WRKY 5.00E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1326 K18835 - csv:101207853 1142.87