Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1326 | ATGGGTAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGCCCTAGCCCAAGAACATTCTTCTCAGCAATGTTAGGGGAGAGTGTTGGTTCTAGACCTGCAATGGATACTACTACCATCAGTGATAAAACCGAAGAGCTTTTTCTCTGGCCTCGAGAACATATGGTATTGGAAAACACTGCTGCAAGAGGCGGGATCCCGGGTATCGATTCTGGAGACCGGTCAATGGATTTAGGTTTGTTCTCGGAGCAGAAATTCCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCGAGATTGAACACGGAGAGCATTCGATCCACTGATCACTCTTTGAATTCCGATGTCAAGTCTCCTTACTTGACCATACCACCCGGTCTCAGTCCAACCACATTGTTAGATTCACCAGTTTTTCTTTCGAATTCACTGGCTCAGCAATCCCCCACAACTGGAAAGTTCCCATTTTTGCCGAATGTTAGTTACCGAAGCTCGACGATGACGTCGGAGATCAGCAATAAAGGCAGCGAAAATCCATTTGACGATAACAGTATGTCATTTGCATTCAGACCCAGTGTGGAATCAGGACCCTCCTTTTTTCATAGTGCAACAAGCAAAACAACTTCTGCTACTATTGTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCATGTTCAGAAAATTCTTTTCAAACTCATCTTGTAGAACCACCTCTGTTCTTACCCCAAAGTAGAATCAGTCATCATCCTCAAATGGGAGGACTCTCGACATCATGTGCGGAAAGGGACGATGAGGGTAAGACCGTGTCCGACGATCAAAGACCCTTTGATTCTTTGTGTGATGGTGGTGAACATTCTTCCCCACTCGACGACCAACCGGACGGAGGGGAGCAAAGAGGCAGTGGAGAATCTATGGCCGGTGGTGATTACGGTGCTCCTTCAGAGGATGCATATAACTGGAGAAAATATGGACAAAAACAGGTAAAAGGAAGTGAGTACCCGCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTTGAGCGATCTCACGAGGGCCACATAACAGAGATCATCTATAAAGGAGCACATAACCATCCGAAGCCGTCACCGAACCGTCGAGCATTAATCGGACCTTCTGATCAAGCGGGGCAACAGAGTGCTGCAGGACCCCAGTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGAGGCATGAGAGCCTTGAAGTGACTTCTTCAGCATCTTTGGATCCTGAATATGGAAATCAGCCTAACCCTTTACAGGTTCAAAATGGTAGTCATATCGAAACAGTTGAAGCCATTGCCGCCTCATCCACATTCTCTAATGATGAAGATGAAGACGATAGGGGGACACTTGGTAGTATAACATTGAGGTATGAGGGGGAAGGAGATGAATCCGAGTCTAAGAAAAGGAAACTTGATGCTTATGTAACAGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTCCAGACTACCAGTGAAGTGGATATCCTGGACGATGGCTATCGTTGGCGTAAATATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAATGCACGAACCCCAACTGCACAGTGAGGAAACATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTGATCACAACATACGAAGGAAAGCACAATCACGACGTTCCTGCTGCTCGCAACAGCAGCCACATCAGCTCTGGTACATCATCCAGTCCAGCAATCCAAACTCATGTACACATGACAGGGCCATCCCAGGCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCCATGCTGCAAGACAGCAAATGGGCTTCTCTTTCGGAATGAACCAACCCGGACTCGGAAATCTGGCAATGGCAGCACCCGGGCAAGTCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAACACACCATGTTAATGAAATGGGTTTCTTGTTACCTAAAGGAGAACCCAAAGTAGAACCTACATCTGATCTTGGCTTGAACTTTTACAATGGTTCAGCTGTGTATCACCAAATTATGAGTAGGCTTCCACTTGAACCTGAGATGTGA | 2163 | 46.69 | MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGESVGSRPAMDTTTISDKTEELFLWPREHMVLENTAARGGIPGIDSGDRSMDLGLFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSYRSSTMTSEISNKGSENPFDDNSMSFAFRPSVESGPSFFHSATSKTTSATIVPQSCPRIEVPVPCSENSFQTHLVEPPLFLPQSRISHHPQMGGLSTSCAERDDEGKTVSDDQRPFDSLCDGGEHSSPLDDQPDGGEQRGSGESMAGGDYGAPSEDAYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRALIGPSDQAGQQSAAGPQWEDSQKGIPTGAPDWRHESLEVTSSASLDPEYGNQPNPLQVQNGSHIETVEAIAASSTFSNDEDEDDRGTLGSITLRYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPNCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSSPAIQTHVHMTGPSQAQNTIPRFERPAFGHAARQQMGFSFGMNQPGLGNLAMAAPGQVKLPVLPMHPYLAQTHHVNEMGFLLPKGEPKVEPTSDLGLNFYNGSAVYHQIMSRLPLEPEM | 720 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8471473 | 8475673 | - | Sed0001427.1 | Sed03g1326 | 706813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1326 | 720 | SUPERFAMILY | WRKY DNA-binding domain | 519 | 587 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | Gene3D | WRKY domain | 514 | 580 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | ProSiteProfiles | WRKY domain profile. | 522 | 587 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | FunFam | WRKY transcription factor 33 | 514 | 580 | - | - | |
Sed03g1326 | 720 | Gene3D | WRKY domain | 317 | 383 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 392 | 406 | - | - | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 269 | 288 | - | - | |
Sed03g1326 | 720 | FunFam | WRKY transcription factor | 313 | 383 | - | - | |
Sed03g1326 | 720 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 240 | 609 | IPR044810 | GO:0003700(InterPro) | |
Sed03g1326 | 720 | ProSiteProfiles | WRKY domain profile. | 324 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 581 | 603 | - | - | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 373 | 420 | - | - | |
Sed03g1326 | 720 | Pfam | WRKY DNA -binding domain | 528 | 585 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | Pfam | WRKY DNA -binding domain | 324 | 380 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | SMART | WRKY_cls | 323 | 381 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | SMART | WRKY_cls | 527 | 586 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 253 | 327 | - | - | |
Sed03g1326 | 720 | MobiDBLite | consensus disorder prediction | 589 | 603 | - | - | |
Sed03g1326 | 720 | SUPERFAMILY | WRKY DNA-binding domain | 322 | 382 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1205 | Sed-Chr1:8994775 | Sed03g1326 | Sed-Chr3:8471473 | 7.30E-68 | dispersed | |
Sed03g1326 | Sed-Chr3:8471473 | Sed03g1367 | Sed-Chr3:8701543 | 1.20E-78 | dispersed | |
Sed03g1326 | Sed-Chr3:8471473 | Sed03g1327 | Sed-Chr3:8471473 | 0.00E+00 | tandem | |
Sed08g1210 | Sed-Chr8:24995717 | Sed03g1326 | Sed-Chr3:8471473 | 1.40E-61 | transposed | |
Sed03g1326 | Sed-Chr3:8471473 | Sed08g2870 | Sed-Chr8:39875708 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37846 | PF03106 | WRKY | 5.00E-24 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1326 | K18835 | - | csv:101207853 | 1142.87 |