Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1334 ATGGAGTTTTCTTATATTTCTCCATTGCTCTTGTTTTTCTTTCTGCTTCAAACATCTGCTATTCCTACCAAAAAGTCATACATTGTTTATTTGGGATCACACTCATTTGGATTTAACTCTTCAATATATGATGTCCAACATGCAACCCAGTCTCATTACGATATATTAGGATCAGTAAAAGGAAGCAAATTGGCAGCCAAAGAATCAATTATCTACTCGTATAATAGATACATTAATGGCTTTGCTGCCCTACTTGATGAAAATGAAGCCAAGGCTCTTGCGAAGAATCCAAACGTGGTGTCGGTTTTTGAAAACAAGGAAAGAAAATTACACACAACACGATCATGGAGTTTTCTTGGGGTGGAAAGTGATGCAGGAATTATTCCTCCAAATTCCATTTGGAAGGCTGCAAAGTTTGGCCAAGATACAATCATAGGGAATCTTGATACAGGTGTTTGGCCAGAGGCCAAGAGCTTCAATGATGCAGGCTATGGCCCTGTCCCTTCTAGGTGGAGGGGAGTTTGTCAAGGTGGCTCTAACTTTAAATGCAACAGGAAGTTGATTGGAGCAAGATACTTCTCGGAAGGATATAGAATGATTCATGGTCATCCCAACATAAGCAACTTCCAGACTGCACGTGATCAGCGAGGTCACGGATCACACACCTTATCCACAGCGGCTGCCAACTTCGTCCCTGGAGCCAATGTCTTTGGCAATGGCAATGGCACCGCAAAAGGAGGTTCCCCGAAAGCTTGCGTCGCGGCCTACAAGGTCTGTTGGCCTGCCACCGACAGCGGCGGCTGTTCCGACGCTGATATCTTGGCTGGTATCGAAGCCGCTATCAGCGACGGTGTCGATGTCCTCTCCGTCTCTCTTGGTGGCCCTGCTCAAGAGTTTGCTTACGATGCTGTTTCCATTGGGGCATTCCATGCCGCTCAACGAGGAATCGTCGTGGTTTGCTCGGCTGGTAACGATGGCCCGAGTCCTGGGACCGTGACTAATGTGTCTCCATGGATGATCACTGTTGGAGCTAGTTCTATGGACCGGGACTTCTCTACCTATGTTGCCCTTGGAAACAAGAAGCGTTTTAAGGGTGCAAGTCTTTCATCCGGAGCATTGCCAGCTGAAAAGTTGTACCCTTTGATGAATGGTGTGCAAGTAAAGGCTGCCAATGCCTCAAATGATGTTGCCCAATTTTGTGCGGATGGATCGCTTGATCCCACGAAGGCAAAAGGCAGCATTATAGTTTGCCTTCGAGGAGACAATGCAAGAATGGACAAGGATTTCGAGGTTCGTCGTGTCGGTGGTGTCGGTATGATTCTTGTTAATGGTCAGGAAGACGGTTCGGCCCTTATAGCTGATCCTCACTTACTTCCTGCTTCTCATGTAACCTACGACGATGGACTTTCCATTGCTCAGTATATGAACTCGACCAAAACACCAGTGGCTTTTATAACCCAAGTAAAGACAGAGTTGGGAATTAAACCAGCACCTGTTATGGCTTCATTCACATCAAGAGGCCCTAATCCCATCACAGATGAAATGATCAAGCCTGACATAACAGCACCGGGTGTGAGCATAATCGCATCGGTCACGACCGACATAACCGCAACAGGCATGCCATTCGATACGCGTCGGGTGCCTTTCAACGTCGAATCTGGCACTTCCATGGCATGCCCTCACATCTCAGGCGTTGTAGGCCTTCTCAAGACTCTTTATCCTACATGGAGTCCCGCAGCTATCAAATCTGCCATCATGACTACAGCCAAAACAAGAGACAACACCATGCACCCAATATTAGACTCCAAAGTCAAGGCAACCCCATTTGATTATGGTGCAGGACATGTCCATCCCAACAACGCAATGGACCCCGGGCTCGTTTACGACGCGACGGTTGACGACTACTTACTCTTCTTATGCGCACGAGGCTACAACTCCGTCGCACTCAGCAAATTCTCTACCAAGCCATTTGCTTGCCCGAGAGTACCGTTTCCCGTCATCATAGATCACAACTACCCATCAATCGCAGTCCCGAAGTTGAATACGGGCACTCCGGTCACGGTAAATAGAAGAGTTAAGAACGTGGGAAGTGCAGGCACATATGTGGCACGAGTGAAGATGCCCGTGGGAGTTGCGGTTACGATCGAGCCGAGTAAGTTGCAGTTTAACAATGTGGGTGAAGAGAAAGCTTTCAAGGTTGTGTTTAAGTCCACAGGAAAAGTTAAACGTCAAGGGTATGTGTTTGGGACATTGGTATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCTATCGCAGTGAACATAGGATGA 2310 47.32 MEFSYISPLLLFFFLLQTSAIPTKKSYIVYLGSHSFGFNSSIYDVQHATQSHYDILGSVKGSKLAAKESIIYSYNRYINGFAALLDENEAKALAKNPNVVSVFENKERKLHTTRSWSFLGVESDAGIIPPNSIWKAAKFGQDTIIGNLDTGVWPEAKSFNDAGYGPVPSRWRGVCQGGSNFKCNRKLIGARYFSEGYRMIHGHPNISNFQTARDQRGHGSHTLSTAAANFVPGANVFGNGNGTAKGGSPKACVAAYKVCWPATDSGGCSDADILAGIEAAISDGVDVLSVSLGGPAQEFAYDAVSIGAFHAAQRGIVVVCSAGNDGPSPGTVTNVSPWMITVGASSMDRDFSTYVALGNKKRFKGASLSSGALPAEKLYPLMNGVQVKAANASNDVAQFCADGSLDPTKAKGSIIVCLRGDNARMDKDFEVRRVGGVGMILVNGQEDGSALIADPHLLPASHVTYDDGLSIAQYMNSTKTPVAFITQVKTELGIKPAPVMASFTSRGPNPITDEMIKPDITAPGVSIIASVTTDITATGMPFDTRRVPFNVESGTSMACPHISGVVGLLKTLYPTWSPAAIKSAIMTTAKTRDNTMHPILDSKVKATPFDYGAGHVHPNNAMDPGLVYDATVDDYLLFLCARGYNSVALSKFSTKPFACPRVPFPVIIDHNYPSIAVPKLNTGTPVTVNRRVKNVGSAGTYVARVKMPVGVAVTIEPSKLQFNNVGEEKAFKVVFKSTGKVKRQGYVFGTLVWSDGKHFVRSPIAVNIG 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8497376 8502959 + Sed0007540.1 Sed03g1334 706821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1334 769 Pfam Subtilase family 140 596 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed03g1334 769 SUPERFAMILY Subtilisin-like 110 626 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed03g1334 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 764 IPR045051 -
Sed03g1334 769 Gene3D Peptidase S8/S53 domain 142 635 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed03g1334 769 FunFam Subtilisin-like protease SBT1.5 142 367 - -
Sed03g1334 769 CDD PA_subtilisin_like 354 485 - -
Sed03g1334 769 FunFam Subtilisin-like protease SBT1.5 639 769 - -
Sed03g1334 769 SUPERFAMILY Protease propeptides/inhibitors 25 108 - -
Sed03g1334 769 Gene3D - 348 492 - -
Sed03g1334 769 Pfam Fibronectin type-III domain 669 766 IPR041469 -
Sed03g1334 769 Gene3D - 639 768 - -
Sed03g1334 769 FunFam Subtilisin-like protease SBT5.3 16 111 - -
Sed03g1334 769 CDD Peptidases_S8_3 109 589 IPR034197 -
Sed03g1334 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 554 564 IPR023828 -
Sed03g1334 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 111 IPR037045 -
Sed03g1334 769 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Sed03g1334 769 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Sed03g1334 769 PRINTS Subtilisin serine protease family (S8) signature 553 569 IPR015500 -
Sed03g1334 769 ProSiteProfiles Serine proteases, subtilase domain profile. 115 622 - -
Sed03g1334 769 FunFam subtilisin-like protease SBT1.5 348 492 - -
Sed03g1334 769 Pfam PA domain 399 471 IPR003137 -
Sed03g1334 769 Pfam Peptidase inhibitor I9 26 111 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1334 Sed-Chr3:8497376 Sed08g2878 Sed-Chr8:39924691 1.10E-273 dispersed
Sed03g1334 Sed-Chr3:8497376 Sed03g1335 Sed-Chr3:8505527 1.60E-283 tandem
Sed01g2477 Sed-Chr1:18525072 Sed03g1334 Sed-Chr3:8497376 9.20E-154 transposed
Sed03g2277 Sed-Chr3:17157814 Sed03g1334 Sed-Chr3:8497376 1.10E-143 transposed
Sed05g2099 Sed-Chr5:34142209 Sed03g1334 Sed-Chr3:8497376 1.10E-247 transposed
Sed11g1173 Sed-Chr11:27638466 Sed03g1334 Sed-Chr3:8497376 2.50E-220 transposed
Sed13g0030 Sed-Chr13:191029 Sed03g1334 Sed-Chr3:8497376 7.70E-145 transposed
Sed03g1334 Sed-Chr3:8497376 Sed08g2876 Sed-Chr8:39910216 3.00E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1334 - - - 0.0