Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1346 ATGCCGCCAAGAAACCTCCTCGTTTTCGCCCTTTTCCTCTTCCTCTTCCTCTTCCCCCCTCCAAGAACACGCGCCACAAGCTTCGATTTCACTTATTTCAGCCTCAGAAACCTCACTCTCCTCGGCGATTCCCACCTCCGCAACGGCGTCATCGGCCTCACCCAAGAGCTTGGCGTCCCTTCCTCCAGCGCAGGCGCCGCCGTCTACAACCAACCCATCGAATTTTACGACGGCGATTCCAACACCACCGCCTCTTTCTCCACTAGGTTCTCTTTCTCCATCACCAACATGAACCCATCTTCCTCCGGCGACGGCCTCTCCTTTTTCCTCTCGCCGGATAATCAAACCCTCGGCAGCTCCGGCGGGTTTCTGGGTCTCGCCGATTCTACCCAAATCAATAAGAATAAGTTTGTTGCGGTTGAATTTGATACCCATCTCGATTCTTTCTTTAATGATCCGGATGCCCATCATGTTGGTTTGGATATTGAGAGCTTGATTTCTGTCAAGACGGCGGACCCTGCTTCTCAAGGGGTTTATCTCAAGAGTGGGAAGTTGGTCACTGCTTGGATCGAGTACAAGAATGAGGAGTCTAAGCTGAAGGTTTTCTTGAGTCATTCTGGTTTTAAGCCTCCGATTCCGCTTCTCGATATCGATGTTGATCTTTCGAGGTATCTTAGAGAGGTTATGTATGTCGGGTTTTCGGGTTCGACGGAAGGGAGTACTGAGCGTCATTGGATTGAGAGTTGGAGTTTTTTTACTTCTGGGTTTGTTCCTGCTAGGCCTAGATTTAAGCCTCATAATGTTTCTGATAGCTCTGTGATTGTTTCTCCCAATATTCCCGTGTCTGATTCTGCTAATGGACATCGAAGTAGGCTCGGGTTGGGACTCGGCATTGCTGGACCGGGGTTCTTTTGTGCTGTGATTGCGGTGTTTGGTTTCTTTTCGCTTAGGAAATGGAAGAAGATTAGGACTCAGAAGAGTTTTAAGGTTGAGCTTTTGACAGGTCCTAGAGAGTTTAGCTACAGAGAACTTAAGGCAGCTACAAAAGGGTTTCATTCCAGTAGGATCATTGGCAATGGAGCTTTTGGGACTGTCTACAAAGCTTTTTGCAACTCCTTCGGAACTATTGCTGCAGTCAAAAGATCTAAGCATTCCCATGAAGGGAAGACCGAGTTCCTGGCTGAGTTGTCGATCATAGCTCGGTTGAGGCACAAGAATTTGCTTCAGCTCCAAGGTTGGTGTGTCGAGAAGGGCGAACTGCTTCTTGTTTATGACTTTATGCCGAATGGGAGCCTTGATAAGCTGCTTTACTTGGAATCAGAAGAAGCTAGCAGACTTAACTGGTCTCACAGATACAACATTGTTGTTGGGTTGGCCTCTGTGCTGACATATCTACATCAGGAATGTGAGCAACAGGTCATCCATAGAGATATAAAGACTGCTAATGTACTGTTGGATGGGAACTTCAATGCGAGACTGGGCGATTTTGGATTGGCGAAGCTCATGGATCATGACAAGAGCCCGGTTTCAACTCTAACTGCAGGAACAATGGGTTACCTTGCACCTGAGTACCTTCAATATGGAAAAGCGACTGAGAAAACCGACATCTTCAGCTACGGTGTGGTTATACTCGAAGTGGCCTGTGGGAGGAGGCCAATCGAACGAGAAGCAGGTACTCAGAAGATGGTTAATCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGTAAGATCATTGAAGCAGCCGATAAAAGGTTGAGCGGGGACTTCAAGGAAGAAGAAATGAGAAAGCTGTTACTCATAGGATTGAGCTGCGCAAACCCGGATAGCTCGGTAAGGCCTTCGATGAGGAAAGTCCTACAGATTCTCAACAACGAGGCAGAGCCGGTGTTCGTACCGAAAATGAAGCCTAGTCTAACTTTTTCTTGTGGCTTTTCATTGACTGTGGATGACATTATAATAGAGGAAGGAGGAGAGTGGGAACCTTCAAAGACAACCATTGTCCAAATAGACTGA 2016 47.32 MPPRNLLVFALFLFLFLFPPPRTRATSFDFTYFSLRNLTLLGDSHLRNGVIGLTQELGVPSSSAGAAVYNQPIEFYDGDSNTTASFSTRFSFSITNMNPSSSGDGLSFFLSPDNQTLGSSGGFLGLADSTQINKNKFVAVEFDTHLDSFFNDPDAHHVGLDIESLISVKTADPASQGVYLKSGKLVTAWIEYKNEESKLKVFLSHSGFKPPIPLLDIDVDLSRYLREVMYVGFSGSTEGSTERHWIESWSFFTSGFVPARPRFKPHNVSDSSVIVSPNIPVSDSANGHRSRLGLGLGIAGPGFFCAVIAVFGFFSLRKWKKIRTQKSFKVELLTGPREFSYRELKAATKGFHSSRIIGNGAFGTVYKAFCNSFGTIAAVKRSKHSHEGKTEFLAELSIIARLRHKNLLQLQGWCVEKGELLLVYDFMPNGSLDKLLYLESEEASRLNWSHRYNIVVGLASVLTYLHQECEQQVIHRDIKTANVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDIFSYGVVILEVACGRRPIEREAGTQKMVNLVDWVWGLHSQGKIIEAADKRLSGDFKEEEMRKLLLIGLSCANPDSSVRPSMRKVLQILNNEAEPVFVPKMKPSLTFSCGFSLTVDDIIIEEGGEWEPSKTTIVQID 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8593281 8595296 + Sed0012973.1 Sed03g1346 706833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1346 671 SUPERFAMILY Protein kinase-like (PK-like) 334 644 IPR011009 -
Sed03g1346 671 Gene3D - 24 260 - -
Sed03g1346 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 24 264 - -
Sed03g1346 671 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524(InterPro)
Sed03g1346 671 Pfam Legume lectin domain 26 256 IPR001220 GO:0030246(InterPro)
Sed03g1346 671 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Sed03g1346 671 SMART serkin_6 351 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1346 671 Pfam Protein kinase domain 351 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1346 671 CDD lectin_legume_LecRK_Arcelin_ConA 26 255 IPR001220 GO:0030246(InterPro)
Sed03g1346 671 Gene3D Phosphorylase Kinase; domain 1 314 426 - -
Sed03g1346 671 ProSiteProfiles Protein kinase domain profile. 351 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1346 671 ProSitePatterns Legume lectins beta-chain signature. 138 144 IPR019825 -
Sed03g1346 671 CDD STKc_IRAK 357 625 - -
Sed03g1346 671 PANTHER - 38 633 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Sed03g1346 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 315 426 - -
Sed03g1346 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 427 641 - -
Sed03g1346 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 257 IPR013320 -
Sed03g1346 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0755 Sed-Chr2:45263499 Sed03g1346 Sed-Chr3:8593281 1.80E-175 dispersed
Sed03g0467 Sed-Chr3:2791213 Sed03g1346 Sed-Chr3:8593281 9.10E-126 dispersed
Sed03g1346 Sed-Chr3:8593281 Sed08g2907 Sed-Chr8:40067737 2.10E-292 dispersed
Sed04g2059 Sed-Chr4:34989634 Sed03g1346 Sed-Chr3:8593281 2.60E-66 transposed
Sed03g1346 Sed-Chr3:8593281 Sed08g2906 Sed-Chr8:40067737 2.10E-292 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78889 PF00069 Pkinase 5.40E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1346 - - - 0.0