Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1367 ATGGACCCCACCCACGCCGACCTCGCCGATCCTTCTCATGCCCGCCTTCCGCCACCCTCCGCCGCCGCCGCTTGTGGCGCCAAGTACAAGCTTATGTCTCCGGCCAAGCTCCCCATCTCCCGTTCCCCTTGCATTACCATCCCTCCCGGCCTCAGTCCCACCTCATTTCTCGAGTCTCCCGTTCTGCTCACCAACTTGAAGGCAGAGCCTTCTCCGACTACTGGGTCCCTTACCAAGCTTCCAATGGCCCATGACTCTTCTAGCTCAGCTATTTATTCAATGAGTGCCATGGCTTTCTCAAATACTCATGTCTCAGATGAAGGGAAATCCAGCTACTTTGAGTTCAAACCTTATGTTGGACCAAACATGGTTCCCGCAGATTTGACTCACAGGAAAGTTGAACAATCTAGAGAAGTTCAAGTTCAAGGCCAATCTCAATCAAACGTCATGTCATATGATTTGAGTCGATCAACTCAGATGGATGCAGTTGCTTCAGGGGTTAGTGTTCCTGAAGTTGATGGAGATGATTTCAACCATAGTTCGAACACAAATACGAGGGCTCAGCCCCCACAATCTGATTCAAAAGCAAGTGGTATTCCCGTAGTTTCCGATAGGATATCTGATGATGGATATAACTGGCGAAAATATGGACAGAAGCATGTTAAAGGAAGTGAATTTCCACGTAGCTATTATAAATGTACACACCCAAACTGTGAAGTGAAAAAGCTATTCGAACGCTCTTATGACGGACAGATAACTGATATTATCTATAAGGGTACCCATGATCATCCTAAGCCTCAGCCAAGTAGGCGATATACTGCCAGCGCTTCTGTGAATGTTCAAGAAGATCGATCTGATAAACCTTTACTTTTAACTGGCCAAGATGACAGGACGTGCGGCATATATGCTCAAACAGTGCATACCATTGAGTCAAATGGAACTCCAGAAACATCCCAAGTTGCAAATGATAGCATGGTCGAAGGTTCAGGAACAACTCTGCCATTCAAGAGTCATGATGAGGTTGATGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTAGGTTTTGATGTCTGCCCGATGGTTAAGCCTATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTCGATATATTGGATGATGGGTATCGCTGGCGCAAATACGGCCAGAAGGTAGTGCGAGGAAACCCCAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCCGTTATAACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCCAAAACTAGTAGCCACGACGTTGCTGGCTCATCGACAATTGCACCATCAAGGTATAGACATGAAGAGAGCGATACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACGGGTGGTGAGAATAGACCAAACGGATACAGGCAGGCATTGCACCATTCTCAACTTGTTGAAAACCAACCTCCACATGGAAATTTCAACTTTGAAGTAGCTCAACAGAACTCAGCCCCAACTTATTTTGGTGTTCTCAATAGAGGTATAAACCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACGATGGAGATTGCTCCACAAAACCATTCGTCTCACCCATATCCGACGAGCATCGGGAGAATACTAACAGGGCCGTAA 1704 46.48 MDPTHADLADPSHARLPPPSAAAACGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKAEPSPTTGSLTKLPMAHDSSSSAIYSMSAMAFSNTHVSDEGKSSYFEFKPYVGPNMVPADLTHRKVEQSREVQVQGQSQSNVMSYDLSRSTQMDAVASGVSVPEVDGDDFNHSSNTNTRAQPPQSDSKASGIPVVSDRISDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITDIIYKGTHDHPKPQPSRRYTASASVNVQEDRSDKPLLLTGQDDRTCGIYAQTVHTIESNGTPETSQVANDSMVEGSGTTLPFKSHDEVDDDDIFSKRRKMELGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVAGSSTIAPSRYRHEESDTISLDLGVGIGTGGENRPNGYRQALHHSQLVENQPPHGNFNFEVAQQNSAPTYFGVLNRGINQHGSRESLSESRTMEIAPQNHSSHPYPTSIGRILTGP 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8701543 8707564 - Sed0009767.1 Sed03g1367 706854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1367 567 Gene3D WRKY domain 200 267 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 MobiDBLite consensus disorder prediction 546 567 - -
Sed03g1367 567 ProSiteProfiles WRKY domain profile. 377 442 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 MobiDBLite consensus disorder prediction 162 204 - -
Sed03g1367 567 MobiDBLite consensus disorder prediction 175 198 - -
Sed03g1367 567 Gene3D WRKY domain 369 435 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 SUPERFAMILY WRKY DNA-binding domain 374 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 SUPERFAMILY WRKY DNA-binding domain 204 266 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 FunFam WRKY transcription factor 33 369 435 - -
Sed03g1367 567 ProSiteProfiles WRKY domain profile. 202 266 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 Pfam WRKY DNA -binding domain 383 440 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 467 IPR044810 GO:0003700(InterPro)
Sed03g1367 567 MobiDBLite consensus disorder prediction 258 281 - -
Sed03g1367 567 FunFam WRKY transcription factor 194 267 - -
Sed03g1367 567 MobiDBLite consensus disorder prediction 438 457 - -
Sed03g1367 567 SMART WRKY_cls 207 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1367 567 SMART WRKY_cls 382 441 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0179 Sed-Chr2:33375080 Sed03g1367 Sed-Chr3:8701543 8.40E-43 dispersed
Sed03g1326 Sed-Chr3:8471473 Sed03g1367 Sed-Chr3:8701543 1.20E-78 dispersed
Sed03g1367 Sed-Chr3:8701543 Sed08g2870 Sed-Chr8:39875708 4.00E-82 dispersed
Sed03g1367 Sed-Chr3:8701543 Sed03g1368 Sed-Chr3:8701543 4.90E-290 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37849 PF03106 WRKY 3.20E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1367 - - - 0.0