Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1368 ATGGCCCATGACTCTTCTAGCTCAGCTATTTATTCAATGAGTGCCATGGCTTTCTCAAATACTCATGTCTCAGATGAAGGGAAATCCAGCTACTTTGAGTTCAAACCTTATGTTGGACCAAACATGGTTCCCGCAGATTTGACTCACAGGAAAGTTGAACAATCTAGAGAAGTTCAAGTTCAAGGCCAATCTCAATCAAACGTCATGTCATATGATTTGAGTCGATCAACTCAGATGGATGCAGTTGCTTCAGGGGTTAGTGTTCCTGAAGTTGATGGAGATGATTTCAACCATAGTTCGAACACAAATACGAGGGCTCAGCCCCCACAATCTGATTCAAAAGCAAGTGGTATTCCCGTAGTTTCCGATAGGATATCTGATGATGGATATAACTGGCGAAAATATGGACAGAAGCATGTTAAAGGAAGTGAATTTCCACGTAGCTATTATAAATGTACACACCCAAACTGTGAAGTGAAAAAGCTATTCGAACGCTCTTATGACGGACAGATAACTGATATTATCTATAAGGGTACCCATGATCATCCTAAGCCTCAGCCAAGTAGGCGATATACTGCCAGCGCTTCTGTGAATGTTCAAGAAGATCGATCTGATAAACCTTTACTTTTAACTGGCCAAGATGACAGGACGTGCGGCATATATGCTCAAACAGTGCATACCATTGAGTCAAATGGAACTCCAGAAACATCCCAAGTTGCAAATGATAGCATGGTCGAAGGTTCAGGAACAACTCTGCCATTCAAGAGTCATGATGAGGTTGATGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTAGGTTTTGATGTCTGCCCGATGGTTAAGCCTATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTCGATATATTGGATGATGGGTATCGCTGGCGCAAATACGGCCAGAAGGTAGTGCGAGGAAACCCCAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCCGTTATAACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCCAAAACTAGTAGCCACGACGTTGCTGGCTCATCGACAATTGCACCATCAAGGTATAGACATGAAGAGAGCGATACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACGGGTGGTGAGAATAGACCAAACGGATACAGGCAGGCATTGCACCATTCTCAACTTGTTGAAAACCAACCTCCACATGGAAATTTCAACTTTGAAGTAGCTCAACAGAACTCAGCCCCAACTTATTTTGGTGTTCTCAATAGAGGTATAAACCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACGATGGAGATTGCTCCACAAAACCATTCGTCTCACCCATATCCGACGAGCATCGGGAGAATACTAACAGGGCCGTAA 1461 43.87 MAHDSSSSAIYSMSAMAFSNTHVSDEGKSSYFEFKPYVGPNMVPADLTHRKVEQSREVQVQGQSQSNVMSYDLSRSTQMDAVASGVSVPEVDGDDFNHSSNTNTRAQPPQSDSKASGIPVVSDRISDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITDIIYKGTHDHPKPQPSRRYTASASVNVQEDRSDKPLLLTGQDDRTCGIYAQTVHTIESNGTPETSQVANDSMVEGSGTTLPFKSHDEVDDDDIFSKRRKMELGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVAGSSTIAPSRYRHEESDTISLDLGVGIGTGGENRPNGYRQALHHSQLVENQPPHGNFNFEVAQQNSAPTYFGVLNRGINQHGSRESLSESRTMEIAPQNHSSHPYPTSIGRILTGP 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8701543 8706082 - Sed0009767.2 Sed03g1368 706855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1368 486 MobiDBLite consensus disorder prediction 465 486 - -
Sed03g1368 486 MobiDBLite consensus disorder prediction 81 123 - -
Sed03g1368 486 SUPERFAMILY WRKY DNA-binding domain 123 185 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 MobiDBLite consensus disorder prediction 94 117 - -
Sed03g1368 486 MobiDBLite consensus disorder prediction 357 376 - -
Sed03g1368 486 ProSiteProfiles WRKY domain profile. 121 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 FunFam WRKY transcription factor 113 186 - -
Sed03g1368 486 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 388 IPR044810 GO:0003700(InterPro)
Sed03g1368 486 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 Pfam WRKY DNA -binding domain 127 183 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 SUPERFAMILY WRKY DNA-binding domain 293 361 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 ProSiteProfiles WRKY domain profile. 296 361 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 MobiDBLite consensus disorder prediction 177 200 - -
Sed03g1368 486 SMART WRKY_cls 126 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 SMART WRKY_cls 301 360 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 Gene3D WRKY domain 288 354 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 Gene3D WRKY domain 119 186 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1368 486 FunFam WRKY transcription factor 33 288 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1368 Sed-Chr3:8701543 Sed08g2870 Sed-Chr8:39875708 1.00E-73 dispersed
Sed03g1367 Sed-Chr3:8701543 Sed03g1368 Sed-Chr3:8701543 4.90E-290 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37850 PF03106 WRKY 2.60E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1368 - - - 0.0