Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1383 ATGGCGCCTTGTTTTGACCTTGCGGTTTCGAATCTTTTATGTGCTGACGAGAATTGTGATTTCGATGATAACGATGATGAGGAGTTTGTGGTCGGTCCCTGTTTTGTTACAAGTTGTGGGGTACAGAGCCGTCGCGGCGGCGGCGGAGACGGCGGCGATGGGTTGCCGTTTATCGGCGATGAGTGTTTGATTGAAATGGCTGAGAAGGAAACCCATCACTTACCTCTTGATGGGTATTTCTGTAAATTGCAGAACGGCGAGTTGGATGTTGGGGCTAGGAAAGAGGCTGTAAGTTGGATTCTAAAGGTGAGTGCTCATTTCAGCTTTGGACCTCTCTGTACATACTTAGCCGTAAATTACTTGGATCGTTTCCTCTCCTCTTTCGATTTGCCCAAAAGCAAAGCTTGGACAATGCAGTTACTGGCTGTGGCATGTCTGTCTCTTGCAGCCAAAATGGAGGAGACTGAAGTCCCACTCTTTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACTATAGAAAGAATGGAGCTTTTAGTCTTAACCACATTAGGGTGGAGAATGCAGGCAGTTACCCCTTTCTCGTTTATCGATCATTGTCTCCGCAGGATCCTTGATCACGAACTCTCTGTTGAAATGTCGGTCACCCGATCGATTTGCATACTTTTGAGCCTCATACAAGGGATCGATTTCTTGGAATTCAAACCTTTTGAAATTGCAGTAGCTGTGGCAATATCAGTAGCTGGAGAAGCTCAAGCATTGGACCCTATGACAGCAATTCCTCTTCTCTTTCAAGAACTCCAAATGGAAAGAGTGTTGAAATGCATTGATTTGGTTAATGACATGTCGCTAATCTACGGGGGAGGGTTGGTGAAGGAATCGAGAACGTCCATGTCGGAGCCCTGGAGCCCGAGCGGGGTGTTGGGCGTGACGTGCTTAAGTTATAAGAGCAATGAAACAACAGTTGGGTCATGTGCAAATTCTTCGCATCATAACAGCTCAGATGCTGCAAAGAGGAGGAGATTGAACAGACCTTGTGAAGTGGAGCTATAG 1065 46.1 MAPCFDLAVSNLLCADENCDFDDNDDEEFVVGPCFVTSCGVQSRRGGGGDGGDGLPFIGDECLIEMAEKETHHLPLDGYFCKLQNGELDVGARKEAVSWILKVSAHFSFGPLCTYLAVNYLDRFLSSFDLPKSKAWTMQLLAVACLSLAAKMEETEVPLFLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHCLRRILDHELSVEMSVTRSICILLSLIQGIDFLEFKPFEIAVAVAISVAGEAQALDPMTAIPLLFQELQMERVLKCIDLVNDMSLIYGGGLVKESRTSMSEPWSPSGVLGVTCLSYKSNETTVGSCANSSHHNSSDAAKRRRLNRPCEVEL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8792868 8794994 - Sed0015029.1 Sed03g1383 706870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1383 354 Gene3D - 65 279 - -
Sed03g1383 354 CDD CYCLIN_AtCycD-like_rpt1 92 190 - -
Sed03g1383 354 SUPERFAMILY Cyclin-like 58 192 IPR036915 -
Sed03g1383 354 CDD CYCLIN_AtCycD-like_rpt2 195 283 - -
Sed03g1383 354 FunFam D6-type cyclin 192 281 - -
Sed03g1383 354 FunFam D2/4-type cyclin 76 191 - -
Sed03g1383 354 Pfam Cyclin, N-terminal domain 65 192 IPR006671 -
Sed03g1383 354 PANTHER CYCLINS 67 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g1383 354 SMART cyclin_7 98 186 IPR013763 -
Sed03g1383 354 MobiDBLite consensus disorder prediction 325 348 - -
Sed03g1383 354 Gene3D - 76 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1383 Sed-Chr3:8792868 Sed10g0826 Sed-Chr10:6040568 2.00E-76 dispersed
Sed03g1383 Sed-Chr3:8792868 Sed03g1384 Sed-Chr3:8792868 4.80E-134 tandem
Sed03g1383 Sed-Chr3:8792868 Sed04g0187 Sed-Chr4:1317654 6.60E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1383 K18810 - csv:101216206 504.597