Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1384 ATGGCGCCTTGTTTTGACCTTGCGGTTTCGAATCTTTTATGTGCTGACGAGAATTGTGATTTCGATGATAACGATGATGAGGAGTTTGTGGTCGGTCCCTGTTTTGTTACAAGTTGTGGGGTACAGAGCCGTCGCGGCGGCGGCGGAGACGGCGGCGATGGGTTGCCGTTTATCGGCGATGAGTGTTTGATTGAAATGGCTGAGAAGGAAACCCATCACTTACCTCTTGATGGGTATTTCTGTAAATTGCAGAACGGCGAGTTGGATGTTGGGGCTAGGAAAGAGGCTGTAAGTTGGATTCTAAAGGTGAGTGCTCATTTCAGCTTTGGACCTCTCTGTACATACTTAGCCGTAAATTACTTGGATCGTTTCCTCTCCTCTTTCGATTTGCCCAAAAGCAAAGCTTGGACAATGCAGTTACTGGCTGTGGCATGTCTGTCTCTTGCAGCCAAAATGGAGGAGACTGAAGTCCCACTCTTTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACTATAGAAAGAATGGAGCTTTTAGTCTTAACCACATTAGGGTGGAGAATGCAGGCAGTTACCCCTTTCTCGTTTATCGATCATTGTCTCCGCAGGATCCTTGATCACGAACTCTCTGTTGAAATGTCGGTCACCCGATCGATTTGCATACTTTTGAGCCTCATACAAGGTCCTCTTTCTATCCTTCCACTAGCTAGCATCAGTGTAGTATCAACATCCATTATATGTGTGACACGAACAATATGGTCATGTCGAGGTCTCGAAATGGTTTTGATTTATCTTCTTTTTCGGGTGGTCGGAAAACATATGCAGGGATCGATTTCTTGGAATTCAAACCTTTTGAAATTGCAGTAG 879 44.82 MAPCFDLAVSNLLCADENCDFDDNDDEEFVVGPCFVTSCGVQSRRGGGGDGGDGLPFIGDECLIEMAEKETHHLPLDGYFCKLQNGELDVGARKEAVSWILKVSAHFSFGPLCTYLAVNYLDRFLSSFDLPKSKAWTMQLLAVACLSLAAKMEETEVPLFLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHCLRRILDHELSVEMSVTRSICILLSLIQGPLSILPLASISVVSTSIICVTRTIWSCRGLEMVLIYLLFRVVGKHMQGSISWNSNLLKLQ 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8792868 8794994 - Sed0015029.2 Sed03g1384 706871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1384 292 Pfam Cyclin, N-terminal domain 65 192 IPR006671 -
Sed03g1384 292 CDD CYCLIN_AtCycD-like_rpt1 92 190 - -
Sed03g1384 292 Gene3D - 65 251 - -
Sed03g1384 292 SUPERFAMILY Cyclin-like 58 192 IPR036915 -
Sed03g1384 292 Gene3D - 76 193 - -
Sed03g1384 292 FunFam D2/4-type cyclin 76 193 - -
Sed03g1384 292 SMART cyclin_7 98 186 IPR013763 -
Sed03g1384 292 PANTHER CYCLINS 67 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1384 Sed-Chr3:8792868 Sed04g0187 Sed-Chr4:1317654 3.20E-99 dispersed
Sed03g1383 Sed-Chr3:8792868 Sed03g1384 Sed-Chr3:8792868 4.80E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1384 K18810 - csv:101216206 330.872