Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1396 ATGGCGGCTGCTAATCCTCAGCCTCTGCAAGCGCGTCCGTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGCGATTATGAAGATTGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTACTCGAAGACACTCATATGGCTTCGGTGAGCGTCGCGAACCATGGAGGTTTGGTTATGGCGTCTAGAACTAGTGAGCTTACGCTTTCATTTGAGGGCGAGGTTTATGTGTTCCCTGCTGTTACTCCTGAAAAGGTACAAGCCGTGCTCTTACTTCTAGGAGGTCGTGACATGCCGACTGGTGTACCTACAATGGAAGGACCATACGATCATAATAACAGGGGTATGGTTGACACCCCGAAGCGCTCCAACTTATCACGGAGAATAGCCTCTCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCATAAAAGAAAATTCAGGTGCTTCAAGTTGGGAGTCGGCACATAATTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAAAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCGAGAACTTTGTGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAACGCATCTTCTGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAAGAAGAATTTTCAAGTATCCCGGATGAACATGACATAAGTGAAACCATTGGAGACCTTACAAATTCGTTGCCCATGCAAGTTGTCAATCATTCAACTAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCAAATCCTTCGGATACCGATATAGACATCCCGACTAACTTTGATTAG 993 47.13 MAAANPQPLQARPFQEHVQVPTMMGDDDGDYEDCGGGGGGGGDVMDDVLEDTHMASVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDMPTGVPTMEGPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASIKENSGASSWESAHNCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNASSDHMEPETPMDVKPTIMEEEFSSIPDEHDISETIGDLTNSLPMQVVNHSTNGDEQEPLIELANPSDTDIDIPTNFD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8892742 8900282 - Sed0027362.4 Sed03g1396 706883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1396 330 Gene3D - 202 252 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1396 330 SMART tify_2 67 102 IPR010399 -
Sed03g1396 330 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Sed03g1396 330 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 Pfam CCT motif 135 176 IPR010402 GO:0005515(InterPro)
Sed03g1396 330 PANTHER GATA TRANSCRIPTION FACTOR 28 24 301 IPR045280 GO:0006355(InterPro)
Sed03g1396 330 CDD ZnF_GATA 205 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1396 330 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 ProSiteProfiles GATA-type zinc finger domain profile. 200 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 250 - -
Sed03g1396 330 Pfam tify domain 70 101 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1396 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1394 Sed-Chr3:8892742 Sed03g1396 Sed-Chr3:8892742 1.00E-186 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed03g1395 Sed-Chr3:8892742 Sed03g1396 Sed-Chr3:8892742 1.00E-186 tandem
Sed03g1396 Sed-Chr3:8892742 Sed03g1397 Sed-Chr3:8902413 1.70E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37854 PF06203 CCT 1.40E-13 CL0281 Sed TF