Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1396 ATGGCGGCTGCTAATCCTCAGCCTCTGCAAGCGCGTCCGTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGCGATTATGAAGATTGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTACTCGAAGACACTCATATGGCTTCGGTGAGCGTCGCGAACCATGGAGGTTTGGTTATGGCGTCTAGAACTAGTGAGCTTACGCTTTCATTTGAGGGCGAGGTTTATGTGTTCCCTGCTGTTACTCCTGAAAAGGTACAAGCCGTGCTCTTACTTCTAGGAGGTCGTGACATGCCGACTGGTGTACCTACAATGGAAGGACCATACGATCATAATAACAGGGGTATGGTTGACACCCCGAAGCGCTCCAACTTATCACGGAGAATAGCCTCTCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCATAAAAGAAAATTCAGGTGCTTCAAGTTGGGAGTCGGCACATAATTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAAAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCGAGAACTTTGTGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAACGCATCTTCTGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAAGAAGAATTTTCAAGTATCCCGGATGAACATGACATAAGTGAAACCATTGGAGACCTTACAAATTCGTTGCCCATGCAAGTTGTCAATCATTCAACTAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCAAATCCTTCGGATACCGATATAGACATCCCGACTAACTTTGATTAG 993 47.13 MAAANPQPLQARPFQEHVQVPTMMGDDDGDYEDCGGGGGGGGDVMDDVLEDTHMASVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDMPTGVPTMEGPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASIKENSGASSWESAHNCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNASSDHMEPETPMDVKPTIMEEEFSSIPDEHDISETIGDLTNSLPMQVVNHSTNGDEQEPLIELANPSDTDIDIPTNFD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8892742 8900282 - Sed0027362.4 Sed03g1396 706883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1396 330 Gene3D - 202 252 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1396 330 SMART tify_2 67 102 IPR010399 -
Sed03g1396 330 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Sed03g1396 330 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 Pfam CCT motif 135 176 IPR010402 GO:0005515(InterPro)
Sed03g1396 330 PANTHER GATA TRANSCRIPTION FACTOR 28 24 301 IPR045280 GO:0006355(InterPro)
Sed03g1396 330 CDD ZnF_GATA 205 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1396 330 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 ProSiteProfiles GATA-type zinc finger domain profile. 200 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1396 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 250 - -
Sed03g1396 330 Pfam tify domain 70 101 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1394 Sed-Chr3:8892742 Sed03g1396 Sed-Chr3:8892742 1.00E-186 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed03g1395 Sed-Chr3:8892742 Sed03g1396 Sed-Chr3:8892742 1.00E-186 tandem
Sed03g1396 Sed-Chr3:8892742 Sed03g1397 Sed-Chr3:8902413 1.70E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37854 PF06203 CCT 1.40E-13 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1396 - - - 0.0