Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1397 ATGTACGGACGCGCTCAATCGTTGTCCATGGCCGACCACATCGCCGGCGGCGGCAACGGCGGCGATTCCTTGGATGATCGCTTTGTTCGATTCGGAGCTCACTCTCTCGAAGACGGCGCCGGAGTTGGCGGCGCGATCGAGGATCTCAACCCCGACGCCGTGTATGCCTCCGCCGTCGATGGCTCAGACATGGCTGTTCAACGCGGCGATGGTTCCGGCCAGCTCACGCTTTCGTTCCGTGGCCAAGTCTATCTTTTCGACGCGGTCTCTCCTGATAAGGTTCAAGCAGTGCTATTGTTATTGGGTGGTTCTGAATTGTCTTCTGGTCAGCAAAATGTGGATTTGGTAAATCAGAATCAAAGGATTGCTGTGGACTTCCCCGGACGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTGAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTCGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCACCGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATACAGCCATGGTAGTGTCTCAGAGTCAGGTCGCGAAGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACTCCAATGATGCGGCGAGGTCCATCTGGGCCTAGATCACTTTGCAATGCATGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGAACATCCCGTGACTCCAGCCGAGCAGTGTGAAAGTGATGCTGGTGGAAAGGAGTTAGACTGCAGACATGGAACCCATGCACACAACAATCCGGTATCTTTCTCAAACGGTGATAACTCTGCTTTAATTAATGGCTGA 882 51.7 MYGRAQSLSMADHIAGGGNGGDSLDDRFVRFGAHSLEDGAGVGGAIEDLNPDAVYASAVDGSDMAVQRGDGSGQLTLSFRGQVYLFDAVSPDKVQAVLLLLGGSELSSGQQNVDLVNQNQRIAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKPDGSYSHGSVSESGREESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQEHPVTPAEQCESDAGGKELDCRHGTHAHNNPVSFSNGDNSALING 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8902413 8906730 - Sed0006585.1 Sed03g1397 706884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1397 293 PANTHER GATA TRANSCRIPTION FACTOR 28 48 288 IPR045280 GO:0006355(InterPro)
Sed03g1397 293 Gene3D - 194 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1397 293 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1397 293 SMART tify_2 68 103 IPR010399 -
Sed03g1397 293 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 MobiDBLite consensus disorder prediction 176 207 - -
Sed03g1397 293 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1397 293 CDD ZnF_GATA 202 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 Pfam tify domain 71 102 IPR010399 -
Sed03g1397 293 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Sed03g1397 293 MobiDBLite consensus disorder prediction 244 293 - -
Sed03g1397 293 MobiDBLite consensus disorder prediction 276 293 - -
Sed03g1397 293 MobiDBLite consensus disorder prediction 168 207 - -
Sed03g1397 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1397 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1397 Sed-Chr3:8902413 Sed03g1399 Sed-Chr3:8902413 1.20E-167 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed03g1397 Sed-Chr3:8902413 1.70E-48 tandem
Sed03g1397 Sed-Chr3:8902413 Sed03g1398 Sed-Chr3:8902413 1.20E-167 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37855 PF06203 CCT 4.80E-15 CL0281 Sed TF