Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1397 ATGTACGGACGCGCTCAATCGTTGTCCATGGCCGACCACATCGCCGGCGGCGGCAACGGCGGCGATTCCTTGGATGATCGCTTTGTTCGATTCGGAGCTCACTCTCTCGAAGACGGCGCCGGAGTTGGCGGCGCGATCGAGGATCTCAACCCCGACGCCGTGTATGCCTCCGCCGTCGATGGCTCAGACATGGCTGTTCAACGCGGCGATGGTTCCGGCCAGCTCACGCTTTCGTTCCGTGGCCAAGTCTATCTTTTCGACGCGGTCTCTCCTGATAAGGTTCAAGCAGTGCTATTGTTATTGGGTGGTTCTGAATTGTCTTCTGGTCAGCAAAATGTGGATTTGGTAAATCAGAATCAAAGGATTGCTGTGGACTTCCCCGGACGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTGAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTCGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCACCGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATACAGCCATGGTAGTGTCTCAGAGTCAGGTCGCGAAGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACTCCAATGATGCGGCGAGGTCCATCTGGGCCTAGATCACTTTGCAATGCATGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGAACATCCCGTGACTCCAGCCGAGCAGTGTGAAAGTGATGCTGGTGGAAAGGAGTTAGACTGCAGACATGGAACCCATGCACACAACAATCCGGTATCTTTCTCAAACGGTGATAACTCTGCTTTAATTAATGGCTGA 882 51.7 MYGRAQSLSMADHIAGGGNGGDSLDDRFVRFGAHSLEDGAGVGGAIEDLNPDAVYASAVDGSDMAVQRGDGSGQLTLSFRGQVYLFDAVSPDKVQAVLLLLGGSELSSGQQNVDLVNQNQRIAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKPDGSYSHGSVSESGREESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQEHPVTPAEQCESDAGGKELDCRHGTHAHNNPVSFSNGDNSALING 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8902413 8906730 - Sed0006585.1 Sed03g1397 706884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1397 293 PANTHER GATA TRANSCRIPTION FACTOR 28 48 288 IPR045280 GO:0006355(InterPro)
Sed03g1397 293 Gene3D - 194 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1397 293 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1397 293 SMART tify_2 68 103 IPR010399 -
Sed03g1397 293 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 MobiDBLite consensus disorder prediction 176 207 - -
Sed03g1397 293 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed03g1397 293 CDD ZnF_GATA 202 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1397 293 Pfam tify domain 71 102 IPR010399 -
Sed03g1397 293 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Sed03g1397 293 MobiDBLite consensus disorder prediction 244 293 - -
Sed03g1397 293 MobiDBLite consensus disorder prediction 276 293 - -
Sed03g1397 293 MobiDBLite consensus disorder prediction 168 207 - -
Sed03g1397 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1397 Sed-Chr3:8902413 Sed03g1399 Sed-Chr3:8902413 1.20E-167 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed03g1397 Sed-Chr3:8902413 1.70E-48 tandem
Sed03g1397 Sed-Chr3:8902413 Sed03g1398 Sed-Chr3:8902413 1.20E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37855 PF06203 CCT 4.80E-15 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1397 - - - 0.0