Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1409 ATGATTCTTCCTGGTTCTACCCAATTTTCTCATAAACTGAGGATTCAAAGTGTTCATGGATGCAATAAGTTATATATTAGTGGCAAGGGAATGACCCGTCTTCATCATGTTACCATCATTCCTACATCACACGGTCTGAGGTATGATACTGGAAGTCTTCAGCTCTTACGCAATGCAAGTCGCCCAATGTATTTTGTGTCTTCCAGAGCCAATGTTTTTGTGTGTCGATCTATTCTAGAATCAAGTGGTGGAGCTGGGACTTCTTTTCTAAAATCTGCAGCTGTGGTCTTAACAAGATCTTATGATGCTTTATGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCCGCTTGGGGTATTGGACCTCTTATGCGTTGGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTAATGCTGTGGACTGGAGCTACACTGATCTGCCGGGCATTGGATCCAGTAGTTTTACCATCCGTAGCGAGTCAGGTCGTCAAACAACGACTTCTGAATTTTGTTCGATGTTTGTCTACTGTTCTGGCATTTGCCTACTGTATATCAAGCTTGATTCAACAAGTACAAAAATTTGCCACTGAATCAAATGACTCAAATGATGCAAGAAATCTGGGCTTTGATTTTGCTGGGAAAGCTGTTTACTCTGCAGTCTGGATTGCCGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCAACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTTCTGTCAAGTGTAATGATTCATGCAACACGACCATTTGTGTTAAATGAATGGATTCAGACAAAGATTAATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATAATTCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAATATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAAATCAATTATATTGTAGCTGATATGCGAAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACATCGATCCTGAAAATCAGGCTCTTATGATTATGGTTTCTTGCTTTGTCAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGGGTTATCAGCCATCATAGGGCACGACTTGCCACGCCCATTCGCACAGTTCAGAAAATATATGGCGAGGTTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCCTACAGGGGCTACCAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGACGACAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAGGATGTCAAACAAGAGACAGTCTCGACAACGTCAGGAACGAAATCCCCCGACACAGCTGGATCGTCATCAAATCTTGATACGAAAACTGATGACAAAAAATCAACTTTGCCATCAGGTGCAGCACCTAAGCCTTCAACAGGGTCAGTATCCAACACACAGACCCAGAATCTATCAACAACAACTACTCCAGAACAAAGCAGCATAGAAAAGCCAGCAACAAGCAATGAGATTAAAGGACTGAATTCCAAGGATAATAGTAATACGGCAAGAGGGGCTACACCCAAAAGATCGCCCTCAGCTCCAGCTCTCGGCATCGAGAAAGCTGACGTTCCAACCTCAAGCTTGCTGAACAAGCAAGACAGCGAGAAGCCATCTGCAACACCATCAGCCGCCAGGCCGCCATTAGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCAAAAAGAACTCTTCCAATTAATGAAGATATGGATCCATCTCCCTTCAACTCTTCAGCTGATTCAAAAGAAATTTCCACACAGAGGAATGGGATTGAGTTTGCTCCAAATAGCAAGGACATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGCTACAAAAAGTGATTGA 2154 42.99 MILPGSTQFSHKLRIQSVHGCNKLYISGKGMTRLHHVTIIPTSHGLRYDTGSLQLLRNASRPMYFVSSRANVFVCRSILESSGGAGTSFLKSAAVVLTRSYDALCSSPLLLKLIPAACVIAFAAWGIGPLMRWGRILFLHEPDGSWKKSSTYYVTTSYVQPLMLWTGATLICRALDPVVLPSVASQVVKQRLLNFVRCLSTVLAFAYCISSLIQQVQKFATESNDSNDARNLGFDFAGKAVYSAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSPTGATNRPLLLIEPSYKVNGDDKAKVSSRPTRSSNEEKDVKQETVSTTSGTKSPDTAGSSSNLDTKTDDKKSTLPSGAAPKPSTGSVSNTQTQNLSTTTTPEQSSIEKPATSNEIKGLNSKDNSNTARGATPKRSPSAPALGIEKADVPTSSLLNKQDSEKPSATPSAARPPLEENIVLGVALEGSKRTLPINEDMDPSPFNSSADSKEISTQRNGIEFAPNSKDMKDGQMPAVPGATKSD 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8957726 8964812 + Sed0016536.1 Sed03g1409 706896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1409 717 MobiDBLite consensus disorder prediction 520 539 - -
Sed03g1409 717 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Sed03g1409 717 MobiDBLite consensus disorder prediction 672 695 - -
Sed03g1409 717 Gene3D - 298 353 IPR023408 -
Sed03g1409 717 Gene3D - 192 296 - -
Sed03g1409 717 MobiDBLite consensus disorder prediction 553 608 - -
Sed03g1409 717 MobiDBLite consensus disorder prediction 626 640 - -
Sed03g1409 717 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g1409 717 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 704 IPR045042 -
Sed03g1409 717 MobiDBLite consensus disorder prediction 496 519 - -
Sed03g1409 717 MobiDBLite consensus disorder prediction 496 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1409 Sed-Chr3:8957726 Sed13g1077 Sed-Chr13:9359658 7.80E-192 dispersed
Sed03g1409 Sed-Chr3:8957726 Sed03g1410 Sed-Chr3:8957726 0.00E+00 tandem
Sed03g1409 Sed-Chr3:8957726 Sed04g0205 Sed-Chr4:1513413 1.9e-310 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1409 K22047 - csv:101213477 1157.51