Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1409 | ATGATTCTTCCTGGTTCTACCCAATTTTCTCATAAACTGAGGATTCAAAGTGTTCATGGATGCAATAAGTTATATATTAGTGGCAAGGGAATGACCCGTCTTCATCATGTTACCATCATTCCTACATCACACGGTCTGAGGTATGATACTGGAAGTCTTCAGCTCTTACGCAATGCAAGTCGCCCAATGTATTTTGTGTCTTCCAGAGCCAATGTTTTTGTGTGTCGATCTATTCTAGAATCAAGTGGTGGAGCTGGGACTTCTTTTCTAAAATCTGCAGCTGTGGTCTTAACAAGATCTTATGATGCTTTATGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCCGCTTGGGGTATTGGACCTCTTATGCGTTGGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTAATGCTGTGGACTGGAGCTACACTGATCTGCCGGGCATTGGATCCAGTAGTTTTACCATCCGTAGCGAGTCAGGTCGTCAAACAACGACTTCTGAATTTTGTTCGATGTTTGTCTACTGTTCTGGCATTTGCCTACTGTATATCAAGCTTGATTCAACAAGTACAAAAATTTGCCACTGAATCAAATGACTCAAATGATGCAAGAAATCTGGGCTTTGATTTTGCTGGGAAAGCTGTTTACTCTGCAGTCTGGATTGCCGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCAACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTTCTGTCAAGTGTAATGATTCATGCAACACGACCATTTGTGTTAAATGAATGGATTCAGACAAAGATTAATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATAATTCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAATATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAAATCAATTATATTGTAGCTGATATGCGAAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACATCGATCCTGAAAATCAGGCTCTTATGATTATGGTTTCTTGCTTTGTCAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGGGTTATCAGCCATCATAGGGCACGACTTGCCACGCCCATTCGCACAGTTCAGAAAATATATGGCGAGGTTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCCTACAGGGGCTACCAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGACGACAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAGGATGTCAAACAAGAGACAGTCTCGACAACGTCAGGAACGAAATCCCCCGACACAGCTGGATCGTCATCAAATCTTGATACGAAAACTGATGACAAAAAATCAACTTTGCCATCAGGTGCAGCACCTAAGCCTTCAACAGGGTCAGTATCCAACACACAGACCCAGAATCTATCAACAACAACTACTCCAGAACAAAGCAGCATAGAAAAGCCAGCAACAAGCAATGAGATTAAAGGACTGAATTCCAAGGATAATAGTAATACGGCAAGAGGGGCTACACCCAAAAGATCGCCCTCAGCTCCAGCTCTCGGCATCGAGAAAGCTGACGTTCCAACCTCAAGCTTGCTGAACAAGCAAGACAGCGAGAAGCCATCTGCAACACCATCAGCCGCCAGGCCGCCATTAGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCAAAAAGAACTCTTCCAATTAATGAAGATATGGATCCATCTCCCTTCAACTCTTCAGCTGATTCAAAAGAAATTTCCACACAGAGGAATGGGATTGAGTTTGCTCCAAATAGCAAGGACATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGCTACAAAAAGTGATTGA | 2154 | 42.99 | MILPGSTQFSHKLRIQSVHGCNKLYISGKGMTRLHHVTIIPTSHGLRYDTGSLQLLRNASRPMYFVSSRANVFVCRSILESSGGAGTSFLKSAAVVLTRSYDALCSSPLLLKLIPAACVIAFAAWGIGPLMRWGRILFLHEPDGSWKKSSTYYVTTSYVQPLMLWTGATLICRALDPVVLPSVASQVVKQRLLNFVRCLSTVLAFAYCISSLIQQVQKFATESNDSNDARNLGFDFAGKAVYSAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSPTGATNRPLLLIEPSYKVNGDDKAKVSSRPTRSSNEEKDVKQETVSTTSGTKSPDTAGSSSNLDTKTDDKKSTLPSGAAPKPSTGSVSNTQTQNLSTTTTPEQSSIEKPATSNEIKGLNSKDNSNTARGATPKRSPSAPALGIEKADVPTSSLLNKQDSEKPSATPSAARPPLEENIVLGVALEGSKRTLPINEDMDPSPFNSSADSKEISTQRNGIEFAPNSKDMKDGQMPAVPGATKSD | 717 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8957726 | 8964812 | + | Sed0016536.1 | Sed03g1409 | 706896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 520 | 539 | - | - | |
Sed03g1409 | 717 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - | |
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 672 | 695 | - | - | |
Sed03g1409 | 717 | Gene3D | - | 298 | 353 | IPR023408 | - | |
Sed03g1409 | 717 | Gene3D | - | 192 | 296 | - | - | |
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 553 | 608 | - | - | |
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 626 | 640 | - | - | |
Sed03g1409 | 717 | Pfam | Mechanosensitive ion channel, beta-domain | 282 | 352 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g1409 | 717 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 704 | IPR045042 | - | |
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 496 | 519 | - | - | |
Sed03g1409 | 717 | MobiDBLite | consensus disorder prediction | 496 | 717 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1409 | Sed-Chr3:8957726 | Sed13g1077 | Sed-Chr13:9359658 | 7.80E-192 | dispersed | |
Sed03g1409 | Sed-Chr3:8957726 | Sed03g1410 | Sed-Chr3:8957726 | 0.00E+00 | tandem | |
Sed03g1409 | Sed-Chr3:8957726 | Sed04g0205 | Sed-Chr4:1513413 | 1.9e-310 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1409 | K22047 | - | csv:101213477 | 1157.51 |