Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1410 ATGATTCTTCCTGGTTCTACCCAATTTTCTCATAAACTGAGGATTCAAAGTGTTCATGGATGCAATAAGTTATATATTAGTGGCAAGGGAATGACCCGTCTTCATCATGTTACCATCATTCCTACATCACACGGTCTGAGGTATGATACTGGAAGTCTTCAGCTCTTACGCAATGCAAGTCGCCCAATGTATTTTGTGTCTTCCAGAGCCAATGTTTTTGTGTGTCGATCTATTCTAGAATCAAGTGGTGGAGCTGGGACTTCTTTTCTAAAATCTGCAGCTGTGGTCTTAACAAGATCTTATGATGCTTTATGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCCGCTTGGGGTATTGGACCTCTTATGCGTTGGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTAATGCTGTGGACTGGAGCTACACTGATCTGCCGCTTTGTGTTCAGGGCATTGGATCCAGTAGTTTTACCATCCGTAGCGAGTCAGGTCGTCAAACAACGACTTCTGAATTTTGTTCGATGTTTGTCTACTGTTCTGGCATTTGCCTACTGTATATCAAGCTTGATTCAACAAGTACAAAAATTTGCCACTGAATCAAATGACTCAAATGATGCAAGAAATCTGGGCTTTGATTTTGCTGGGAAAGCTGTTTACTCTGCAGTCTGGATTGCCGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCAACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTTCTGTCAAGTGTAATGATTCATGCAACACGACCATTTGTGTTAAATGAATGGATTCAGACAAAGATTAATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATAATTCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAATATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAAATCAATTATATTGTAGCTGATATGCGAAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACATCGATCCTGAAAATCAGGCTCTTATGATTATGGTTTCTTGCTTTGTCAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGGGTTATCAGCCATCATAGGGCACGACTTGCCACGCCCATTCGCACAGTTCAGAAAATATATGGCGAGGTTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCCTACAGGGGCTACCAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGACGACAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAGGATGTCAAACAAGAGACAGTCTCGACAACGTCAGGAACGAAATCCCCCGACACAGCTGGATCGTCATCAAATCTTGATACGAAAACTGATGACAAAAAATCAACTTTGCCATCAGGTGCAGCACCTAAGCCTTCAACAGGGTCAGTATCCAACACACAGACCCAGAATCTATCAACAACAACTACTCCAGAACAAAGCAGCATAGAAAAGCCAGCAACAAGCAATGAGATTAAAGGACTGAATTCCAAGGATAATAGTAATACGGCAAGAGGGGCTACACCCAAAAGATCGCCCTCAGCTCCAGCTCTCGGCATCGAGAAAGCTGACGTTCCAACCTCAAGCTTGCTGAACAAGCAAGACAGCGAGAAGCCATCTGCAACACCATCAGCCGCCAGGCCGCCATTAGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCAAAAAGAACTCTTCCAATTAATGAAGATATGGATCCATCTCCCTTCAACTCTTCAGCTGATTCAAAAGAAATTTCCACACAGAGGAATGGGATTGAGTTTGCTCCAAATAGCAAGGACATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGCTACAAAAAGTGATTGA 2166 42.98 MILPGSTQFSHKLRIQSVHGCNKLYISGKGMTRLHHVTIIPTSHGLRYDTGSLQLLRNASRPMYFVSSRANVFVCRSILESSGGAGTSFLKSAAVVLTRSYDALCSSPLLLKLIPAACVIAFAAWGIGPLMRWGRILFLHEPDGSWKKSSTYYVTTSYVQPLMLWTGATLICRFVFRALDPVVLPSVASQVVKQRLLNFVRCLSTVLAFAYCISSLIQQVQKFATESNDSNDARNLGFDFAGKAVYSAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSPTGATNRPLLLIEPSYKVNGDDKAKVSSRPTRSSNEEKDVKQETVSTTSGTKSPDTAGSSSNLDTKTDDKKSTLPSGAAPKPSTGSVSNTQTQNLSTTTTPEQSSIEKPATSNEIKGLNSKDNSNTARGATPKRSPSAPALGIEKADVPTSSLLNKQDSEKPSATPSAARPPLEENIVLGVALEGSKRTLPINEDMDPSPFNSSADSKEISTQRNGIEFAPNSKDMKDGQMPAVPGATKSD 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8957726 8964812 + Sed0016536.2 Sed03g1410 706897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1410 721 MobiDBLite consensus disorder prediction 524 543 - -
Sed03g1410 721 SUPERFAMILY Sm-like ribonucleoproteins 286 356 IPR010920 -
Sed03g1410 721 Gene3D - 302 357 IPR023408 -
Sed03g1410 721 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 708 IPR045042 -
Sed03g1410 721 MobiDBLite consensus disorder prediction 676 699 - -
Sed03g1410 721 MobiDBLite consensus disorder prediction 630 644 - -
Sed03g1410 721 Pfam Mechanosensitive ion channel, beta-domain 286 356 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g1410 721 MobiDBLite consensus disorder prediction 557 612 - -
Sed03g1410 721 Gene3D - 162 300 - -
Sed03g1410 721 MobiDBLite consensus disorder prediction 500 523 - -
Sed03g1410 721 MobiDBLite consensus disorder prediction 500 721 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1410 Sed-Chr3:8957726 Sed04g0205 Sed-Chr4:1513413 0.00E+00 dispersed
Sed03g1409 Sed-Chr3:8957726 Sed03g1410 Sed-Chr3:8957726 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1410 K22047 - csv:101213477 1151.73