Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1412 ATGAGTAAAACTTCCCTCATCGCTAAAATGGCTAGAGAAAAGATTAAGATAAAGAAGATCAACAACATTACTGCGAGGCAAGTTACATTTTCGAAACGGCGAAGAGGGCTTTTCAAGAAGGCGGAGGAGCTTTCGGTGCTCTGCGATACCGAGGTGGCACTACTCATCTTCTCCGCAACCGGAAAGCTCTTCGAGTTTTCCAATTCGAGCACAAAGGACGTTATTGGAAGATACAGTTTGCATTCTAGTAACCTTGGAAAGTTAGAGCATCCATCCCTTGACCTGCAGCTTGAGAATAGTAGTCACGTTCGGTTGGCAAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCAAATGAGAGGTGAGGATCTTCAAGGACTGAACATAGAAGATTTGAAGCAATTGGAAAGAGTGCTGGAAGAAGGCCTCGCACGAATTCTTCAAACCAAGGAAAAGAAGATTACGAGTGAAATTAATGAGCTTCAGCTTAAGGGATCAAGGCTGATGGAGGAGAACAAGATGCTTAGAGAACAAATGGCAAGGTTGTCGAATGAAAGAATGGCAGCACCGTTCGTAGATTCCGACGTTGTGGTGCCGACAGAAGGCGTTTCGTGCAGCTGCACCAGCGGCCCTCCCACCGACGATGACAGCTCCGACACCTCTCTCAAGTTAGGGCTTTCTTATCCAAATTGA 693 46.18 MSKTSLIAKMAREKIKIKKINNITARQVTFSKRRRGLFKKAEELSVLCDTEVALLIFSATGKLFEFSNSSTKDVIGRYSLHSSNLGKLEHPSLDLQLENSSHVRLAKEVADMSHQLRQMRGEDLQGLNIEDLKQLERVLEEGLARILQTKEKKITSEINELQLKGSRLMEENKMLREQMARLSNERMAAPFVDSDVVVPTEGVSCSCTSGPPTDDDSSDTSLKLGLSYPN 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8985489 8991883 - Sed0012619.1 Sed03g1412 706899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1412 230 Coils Coil 132 185 - -
Sed03g1412 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 Pfam K-box region 101 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1412 230 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 Gene3D - 22 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 MobiDBLite consensus disorder prediction 206 230 - -
Sed03g1412 230 FunFam Transcription factor, MADS-box 22 92 - -
Sed03g1412 230 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 CDD MADS_MEF2_like 24 84 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed03g1412 230 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1412 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 206 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1412 230 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1412 230 SMART madsneu2 10 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1412 Sed-Chr3:8985489 Sed10g0818 Sed-Chr10:5951273 4.90E-63 dispersed
Sed03g1412 Sed-Chr3:8985489 Sed03g1413 Sed-Chr3:8985489 2.90E-116 tandem
Sed10g0803 Sed-Chr10:5806069 Sed03g1412 Sed-Chr3:8985489 6.20E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37859 PF01486 K-box 2.30E-16 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1412 - - - 0.0