Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1412 | ATGAGTAAAACTTCCCTCATCGCTAAAATGGCTAGAGAAAAGATTAAGATAAAGAAGATCAACAACATTACTGCGAGGCAAGTTACATTTTCGAAACGGCGAAGAGGGCTTTTCAAGAAGGCGGAGGAGCTTTCGGTGCTCTGCGATACCGAGGTGGCACTACTCATCTTCTCCGCAACCGGAAAGCTCTTCGAGTTTTCCAATTCGAGCACAAAGGACGTTATTGGAAGATACAGTTTGCATTCTAGTAACCTTGGAAAGTTAGAGCATCCATCCCTTGACCTGCAGCTTGAGAATAGTAGTCACGTTCGGTTGGCAAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCAAATGAGAGGTGAGGATCTTCAAGGACTGAACATAGAAGATTTGAAGCAATTGGAAAGAGTGCTGGAAGAAGGCCTCGCACGAATTCTTCAAACCAAGGAAAAGAAGATTACGAGTGAAATTAATGAGCTTCAGCTTAAGGGATCAAGGCTGATGGAGGAGAACAAGATGCTTAGAGAACAAATGGCAAGGTTGTCGAATGAAAGAATGGCAGCACCGTTCGTAGATTCCGACGTTGTGGTGCCGACAGAAGGCGTTTCGTGCAGCTGCACCAGCGGCCCTCCCACCGACGATGACAGCTCCGACACCTCTCTCAAGTTAGGGCTTTCTTATCCAAATTGA | 693 | 46.18 | MSKTSLIAKMAREKIKIKKINNITARQVTFSKRRRGLFKKAEELSVLCDTEVALLIFSATGKLFEFSNSSTKDVIGRYSLHSSNLGKLEHPSLDLQLENSSHVRLAKEVADMSHQLRQMRGEDLQGLNIEDLKQLERVLEEGLARILQTKEKKITSEINELQLKGSRLMEENKMLREQMARLSNERMAAPFVDSDVVVPTEGVSCSCTSGPPTDDDSSDTSLKLGLSYPN | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8985489 | 8991883 | - | Sed0012619.1 | Sed03g1412 | 706899 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1412 | 230 | Coils | Coil | 132 | 185 | - | - | |
Sed03g1412 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 19 | 66 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | Pfam | K-box region | 101 | 179 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1412 | 230 | ProSitePatterns | MADS-box domain signature. | 12 | 66 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | Gene3D | - | 22 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | MobiDBLite | consensus disorder prediction | 206 | 230 | - | - | |
Sed03g1412 | 230 | FunFam | Transcription factor, MADS-box | 22 | 92 | - | - | |
Sed03g1412 | 230 | PRINTS | MADS domain signature | 47 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | PRINTS | MADS domain signature | 32 | 47 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | PRINTS | MADS domain signature | 12 | 32 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | CDD | MADS_MEF2_like | 24 | 84 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed03g1412 | 230 | ProSiteProfiles | MADS-box domain profile. | 10 | 70 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1412 | 230 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 10 | 206 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed03g1412 | 230 | SUPERFAMILY | SRF-like | 12 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1412 | 230 | SMART | madsneu2 | 10 | 69 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1412 | Sed-Chr3:8985489 | Sed10g0818 | Sed-Chr10:5951273 | 4.90E-63 | dispersed | |
Sed03g1412 | Sed-Chr3:8985489 | Sed03g1413 | Sed-Chr3:8985489 | 2.90E-116 | tandem | |
Sed10g0803 | Sed-Chr10:5806069 | Sed03g1412 | Sed-Chr3:8985489 | 6.20E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37859 | PF01486 | K-box | 2.30E-16 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1412 | - | - | - | 0.0 |