Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1413 | ATGGCTAGAGAAAAGATTAAGATAAAGAAGATCAACAACATTACTGCGAGGCAAGTTACATTTTCGAAACGGCGAAGAGGGCTTTTCAAGAAGGCGGAGGAGCTTTCGGTGCTCTGCGATACCGAGGTGGCACTACTCATCTTCTCCGCAACCGGAAAGCTCTTCGAGTTTTCCAATTCGAGCACAAAGGACGTTATTGGAAGATACAGTTTGCATTCTAGTAACCTTGGAAAGTTAGAGCATCCATCCCTTGACCTGCAGCTTGAGAATAGTAGTCACGTTCGGTTGGCAAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCAAATGAGAGGTGAGGATCTTCAAGGACTGAACATAGAAGATTTGAAGCAATTGGAAAGAGTGCTGGAAGAAGGCCTCGCACGAATTCTTCAAACCAAGGAAAAGAAGATTACGAGTGAAATTAATGAGCTTCAGCTTAAGGGATCAAGGCTGATGGAGGAGAACAAGATGCTTAGAGAACAAATGGCAAGGTTGTCGAATGAAAGAATGGCAGCACCGTTCGTAGATTCCGACGTTGTGGTGCCGACAGAAGGCGTTTCGTGCAGCTGCACCAGCGGCCCTCCCACCGACGATGACAGCTCCGACACCTCTCTCAAGTTAGGGCTTTCTTATCCAAATTGA | 666 | 46.55 | MAREKIKIKKINNITARQVTFSKRRRGLFKKAEELSVLCDTEVALLIFSATGKLFEFSNSSTKDVIGRYSLHSSNLGKLEHPSLDLQLENSSHVRLAKEVADMSHQLRQMRGEDLQGLNIEDLKQLERVLEEGLARILQTKEKKITSEINELQLKGSRLMEENKMLREQMARLSNERMAAPFVDSDVVVPTEGVSCSCTSGPPTDDDSSDTSLKLGLSYPN | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8985489 | 8991981 | - | Sed0012619.2 | Sed03g1413 | 706900 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1413 | 221 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
Sed03g1413 | 221 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | SUPERFAMILY | SRF-like | 3 | 73 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | Coils | Coil | 123 | 176 | - | - | |
Sed03g1413 | 221 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
Sed03g1413 | 221 | Pfam | K-box region | 92 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1413 | 221 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed03g1413 | 221 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 197 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed03g1413 | 221 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed03g1413 | 221 | CDD | MADS_MEF2_like | 15 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1413 | Sed-Chr3:8985489 | Sed10g0818 | Sed-Chr10:5951273 | 4.70E-63 | dispersed | |
Sed03g1412 | Sed-Chr3:8985489 | Sed03g1413 | Sed-Chr3:8985489 | 2.90E-116 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37860 | PF01486 | K-box | 2.10E-16 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1413 | - | - | - | 0.0 |