Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1413 ATGGCTAGAGAAAAGATTAAGATAAAGAAGATCAACAACATTACTGCGAGGCAAGTTACATTTTCGAAACGGCGAAGAGGGCTTTTCAAGAAGGCGGAGGAGCTTTCGGTGCTCTGCGATACCGAGGTGGCACTACTCATCTTCTCCGCAACCGGAAAGCTCTTCGAGTTTTCCAATTCGAGCACAAAGGACGTTATTGGAAGATACAGTTTGCATTCTAGTAACCTTGGAAAGTTAGAGCATCCATCCCTTGACCTGCAGCTTGAGAATAGTAGTCACGTTCGGTTGGCAAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCAAATGAGAGGTGAGGATCTTCAAGGACTGAACATAGAAGATTTGAAGCAATTGGAAAGAGTGCTGGAAGAAGGCCTCGCACGAATTCTTCAAACCAAGGAAAAGAAGATTACGAGTGAAATTAATGAGCTTCAGCTTAAGGGATCAAGGCTGATGGAGGAGAACAAGATGCTTAGAGAACAAATGGCAAGGTTGTCGAATGAAAGAATGGCAGCACCGTTCGTAGATTCCGACGTTGTGGTGCCGACAGAAGGCGTTTCGTGCAGCTGCACCAGCGGCCCTCCCACCGACGATGACAGCTCCGACACCTCTCTCAAGTTAGGGCTTTCTTATCCAAATTGA 666 46.55 MAREKIKIKKINNITARQVTFSKRRRGLFKKAEELSVLCDTEVALLIFSATGKLFEFSNSSTKDVIGRYSLHSSNLGKLEHPSLDLQLENSSHVRLAKEVADMSHQLRQMRGEDLQGLNIEDLKQLERVLEEGLARILQTKEKKITSEINELQLKGSRLMEENKMLREQMARLSNERMAAPFVDSDVVVPTEGVSCSCTSGPPTDDDSSDTSLKLGLSYPN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8985489 8991981 - Sed0012619.2 Sed03g1413 706900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1413 221 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 MobiDBLite consensus disorder prediction 197 221 - -
Sed03g1413 221 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 Coils Coil 123 176 - -
Sed03g1413 221 FunFam Transcription factor, MADS-box 13 83 - -
Sed03g1413 221 Pfam K-box region 92 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1413 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed03g1413 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1413 221 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g1413 221 CDD MADS_MEF2_like 15 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1413 Sed-Chr3:8985489 Sed10g0818 Sed-Chr10:5951273 4.70E-63 dispersed
Sed03g1412 Sed-Chr3:8985489 Sed03g1413 Sed-Chr3:8985489 2.90E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37860 PF01486 K-box 2.10E-16 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1413 - - - 0.0