Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1436 ATGGTGGTCAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGGTCGGCGAAGGCACTTTTGCCAAAGTAAAGTTCGCTCAGAACACTGAGACCGGCGAGAGTGTTGCTATGAAGGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGCCTTCACGAGGTTCTTGCAAGCCGTACTAAGATTTATATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATTATTCAGCATGGACGCCTTAGTGAAGCTGAATCTAGGAAATACTTCCAACAGTTAATTGATGGTGTAGATTATTGCCATAGCAAGGGAGTATATCACAGAGATTTAAAGCCAGAAAATCTGTTACTCGACTCCCTGGGCAATTTAAAGATCTCAGACTTTGGCCTGAGTGCATTGCCCGAACAAGGAGTTAGCCTACTCCGGACAACATGTGGGACTCCGAACTATGTAGCACCGGAGGTTCTCAATCACAAGGGCTATGATGGTGCTATGGCTGATGTTTGGTCCTGTGGGGTAATACTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCATCTTGGTTTTCTGTGGGGGCAAAAACCTTGATCCATAGAATAATTGACCCCAATCCTTCAACTCGTATTACCATTGAACAGATCAGAGAGGATGAGTGGTTCAAGAAAAATTATGTTTCTGTCAATCTTTTGGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAAAGGACCGAAGAAGAACGTGGTAACGAGGACATGAGCCCTCTGGCTCTTAATGCATTTGATCTAATAGTTTTATCTCAAGGCTTAAACCTGGGAACGATGTTCGACCGTGGTCAGGATACTATGAAGCACCCAACACGCTTCGTCTGCCAGAAGCCTGCGAAGGTTACATTATCAACAATGGAAGTTGTAGCTCAATCAATGGGTTTCAAGACGCACATTCGCAATTACAAGATGAGGGTAGAAGGCCCATCAGCAAGCAAGACTTCTTATTTCTCAGTCATTATGGAAATTTTCGAAGTCGCTCCCACGTTTTTCATGGTGGACATTCAGAAAGCAGCTGGGGAGACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGATATCATCTGGAAACCTTCAATTGATACCAACAAATCAAGGACCGGCAAGAACAAGAGTAAAAAGCGCTGA 1341 43.4 MVVRKVGKYEVGRTVGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIIQHGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERADFSCPSWFSVGAKTLIHRIIDPNPSTRITIEQIREDEWFKKNYVSVNLLEDEDVNLDDVNAVFDDPEEQRTEEERGNEDMSPLALNAFDLIVLSQGLNLGTMFDRGQDTMKHPTRFVCQKPAKVTLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSNLEDIIWKPSIDTNKSRTGKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9128983 9134630 - Sed0003043.1 Sed03g1436 706923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1436 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1436 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1436 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Sed03g1436 446 SUPERFAMILY Protein kinase-like (PK-like) 6 294 IPR011009 -
Sed03g1436 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Sed03g1436 446 Gene3D Transferase(Phosphotransferase) domain 1 89 270 - -
Sed03g1436 446 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1436 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Sed03g1436 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Sed03g1436 446 CDD CIPK_C 309 424 - -
Sed03g1436 446 Gene3D Kinase associated domain 1, KA1 302 428 - -
Sed03g1436 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1436 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Sed03g1436 446 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Sed03g1436 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed03g1436 446 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1436 Sed-Chr3:9128983 Sed08g0682 Sed-Chr8:4883467 6.60E-165 dispersed
Sed03g1436 Sed-Chr3:9128983 Sed08g2652 Sed-Chr8:38683291 1.30E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78890 PF00069 Pkinase 8.40E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1436 - - - 0.0