Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1438 ATGGAGCTCGACGATCACGCTTTCGTAGAGGAGTTGCTTGCTCTTCGAAGAGAAACAAATTGGGACGCCATTCCAACGGAGATCACCGATTTCTACTCAAACGCTTGGGCATTCGATTACTATTTCGACCCAAACGCATCCAATTTCTTCCCAAATCCTCCATCGGAACCTCTCCCCGCTCAGAATCTCCACGAACTTCACCATCCTTCCACGAACGAGTTCTCAGATCCACAAATCGCCCATTCCGCCATGGAAGTAGCCGCGCCTCTTCCGGATGTGGAAGAGAAATTAGGTTTTGGAGCGGATGAGATTCAGAAAATGGAGGCGGTTGAGGTTGAATCGGCTTCCAAATCGGAGCGGAATCGGTCTCCGGAAGCTGCAATGCTCTCCGATTTCAACATCGGAGCGGGCTCTGTGGATCGGAAGAACAGATCGAAGAAATCGCAAGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCGCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGGGGATGCAATCGAGTACGTGAAGGAATTGCTGGAGAAGATCGGGAATGGAACGACAAACTCGAGCGAATTCGTAGCGAGGAATTCACCAAAATTTGAGGTTGAAATGAGTAGAAACGGGAACACGAGAATCGAGATCAGGTGTGGGGCGAAACCAGGATTGTTGTTGTCTACTGTGAATACGATGGAAGCATTGGGGCTTGAGATTCAACACTGTGTAATCAGCTGCTTCAATGACTTCGCATTACAAGCCACTTGTTCTCAGGAACGGAAGCAGAAAACAGAACTGAAGGCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 918 49.24 MELDDHAFVEELLALRRETNWDAIPTEITDFYSNAWAFDYYFDPNASNFFPNPPSEPLPAQNLHELHHPSTNEFSDPQIAHSAMEVAAPLPDVEEKLGFGADEIQKMEAVEVESASKSERNRSPEAAMLSDFNIGAGSVDRKNRSKKSQGQPSKNLMAERRRRKRLNDRLAMLRSIVPKISKMDRTAILGDAIEYVKELLEKIGNGTTNSSEFVARNSPKFEVEMSRNGNTRIEIRCGAKPGLLLSTVNTMEALGLEIQHCVISCFNDFALQATCSQERKQKTELKAEELKEALFRNAGYGGSCL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9170858 9174816 + Sed0017550.1 Sed03g1438 706925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1438 305 CDD ACT_UUR-ACR-like 231 294 - -
Sed03g1438 305 Coils Coil 273 293 - -
Sed03g1438 305 Gene3D - 142 206 IPR036638 GO:0046983(InterPro)
Sed03g1438 305 SMART finulus 156 205 IPR011598 GO:0046983(InterPro)
Sed03g1438 305 Pfam Plant bHLH transcription factor, ACT-like domain 223 294 IPR054502 -
Sed03g1438 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983(InterPro)
Sed03g1438 305 MobiDBLite consensus disorder prediction 112 162 - -
Sed03g1438 305 Pfam Helix-loop-helix DNA-binding domain 157 199 IPR011598 GO:0046983(InterPro)
Sed03g1438 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 300 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed03g1438 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 207 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1438 Sed-Chr3:9170858 Sed04g0231 Sed-Chr4:1681461 1.00E-92 dispersed
Sed10g0797 Sed-Chr10:5701655 Sed03g1438 Sed-Chr3:9170858 1.00E-58 wgd
Sed03g1438 Sed-Chr3:9170858 Sed04g0230 Sed-Chr4:1681461 8.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37862 PF00010 HLH 4.60E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1438 - - - 0.0