Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1443 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTTCCTCCATCTCTTCTTCTTCTCAAGCTTTTACCATTACCAATCAGTCTCAGTTCTTCTTTCTCATGCAAAACACTGCCTCAGGAGAGTTCCTGTCTGAATGGGATCTTTCAAGAGGTAAATCCTTCTGCAACTTCATGGGAATCAAGTGCAATGACCGAGGCAGCGTTGTCGGGATTGATATCTCAGGCCAGCCTCTCTCTGGTGGCTTCCCTGAAGATGTATGCTCTTACCTTCCCGAGCTGCAAGTTCTTCGTCTCGCTAGTACTGGTTTTCGGGGATGTTTTCCTTTAGGGATCACCAACTGCTCTCTCCTTGAAGAGCTTGACATGAGCTCTTTGTATCTCAATGGAACAATCCCAGATTTATCACAAATGAAACGACTGCGTGTGCTTGACTTATCGTACAACTCTTTCACTGGTGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTTGAGGTGCTGAATTTCAATGAGAATTACGAGCTTAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCTTGAAGAAGCTGAAATTCATGGTGTTGACAACCTGTATGTTAGACGGGGAAATCCCACCATCGATAGGGAACATGACGTCGCTCGTCGATCTTGAACTCAGCGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATTTCCTTGTTGAAGAACTTGCAACTGCTTGAACTCTATTACAATGAACTCACAGGGAACATACCACAGGAGCTTGGGAATCTAACAGAGCTCGTGGACGTGGACATGTCAGTAAACCTTTTAAGAGGAGAGCTTCCAGAATCAATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACAGGGCAGATTCCACAAGAATTGGGAAAGTACTCACCAATGATCGTCCTCGACTTATCGGAAAATCAGCTGTCGGGACCATTGCCATTGGATATATGCAGAGGGGGCAAATTGCTCTACTTTCTTGTCCTGCAAAACAACATTTCAGGAGAAATGCCAGCAAGTTTAGCTAAATGCGAATCGCTTTTAAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGCACAATTCCTCAAGGAGTTTTGGCTCTTCCCCATGTTTCAATCATTGATGTTGCTTATAATCATCTCACTGGTTCCATTTCAAATTCAATCTCACAAGCAAGAAACTTATCGGAGTTGTTCTTAGAAAGAAACATGATTTCTGGAGTTATCCCACCAGAGATTTCAGGAGCAACCAATCTGGTCAAGCTTGATCTCAGCAACAATCTTCTCTCCGGTCCAATCCCGTCCGAGATCGGTAATCTTAAGAAACTCAATCAGGTGACGTTACAAGGAAACCAACTAGATTCATCAATCCCCAATTCATTCACATCCTTAAAATCCCTCAATGTTCTTGATCTCTCAAACAATCGTTTATCAGGGAAAATCCCAGAAAGTTTAAGCGAGTTGTTCCCAATTTTTTTAAATTTCTCTAACAATCAACTCTCGGGTCCAATTCCTCAGTCTTTAATCAAACAAGGATTAGCCGATAGCTTTTCCGGCAACCCAAATCTCTGCATTCCACCGGCGTATTTCATTTCCTCCGATCAGAAATTCCCAATTTGCCCGCAATTTTCCTTCTCAAAACGTATAAATTCCGTCTGGGTAATCGTAATTCCACTCGTAATCTTCATTGCCGCCATGACCCTGTTCCTAAAACGCCGAATCGCAACGAGAAAAACGTCAATCATCAAGAACAGAGAAGCTCTGTTTTCGTCGTTCTTCCATATACAGAGCTTCAACGAAAACTCGATTCTCGAATCCATGGTGGAAAACAACATAGTGGGTCGCGGCGGATCGGGAACGGTGTACAAAATCAAGCTCGAAAACGGAGAAATCGTCGCCGTGAAAAGGCTATGGAATCGAACCCTAACCACAAAAAAGCATCTCTCCGACAAGGAGTTGAAAACAGAGGTCGAAACCCTAGGAACAATCCGGCACAAGAACATCGTGAAACTCTACAGCTACTTCTCGGATCTAAATTGCAGCTTTCTGGTTTACGAATACATGCCAAACGGAAATCTATGGGACGCGCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCGCCGCATCGCGGAGGGAACCGCCCAAGGCCTCGCCTATCTGCACCACGACCTCTCGCCGCCGGTAATCCACAGAGACATCAAATCCACAAACATTTTACTCGATTCAAATTACAACCCCAAAGTTGCAGATTTCGGCATAGCCAAAGTTCTTCAAGGAGGTTCAGATTTAACCGACTCTGTAATCGCCGGAACTTGCGGCTATTTAGCCCCTGATTACGCATATTCATCGAAGGCGACAACCAAATGCGACGTGTACAGTTTTGGGGTTGTGTTAATGGAGCTGATTACAGGGAAAAAGCCGATTGAAACAGAGTACGGAGAAAATAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGATTCAAAAGAAGGGGTTCTTGAAATTCTCGACGAAAGATTAAAAGGGTTGTTTAGAGATGAGATGATTAAGGCGCTGAGGATCGCAATTCGGTGTACTTACAAGAATCCAAGGCTCCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGCTTGATTCTTGCAAGTTTGATATCCAAAAAGGAGGAAAAAACATGTATGATGTCACTAAATTAAAGTACCCTTTTTTATTCCAAAGTCTAAGGGGGTGA 2853 43.67 MAFHSAFFLLLFFTSSISSSSQAFTITNQSQFFFLMQNTASGEFLSEWDLSRGKSFCNFMGIKCNDRGSVVGIDISGQPLSGGFPEDVCSYLPELQVLRLASTGFRGCFPLGITNCSLLEELDMSSLYLNGTIPDLSQMKRLRVLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYELNLWKLPEKISSLKKLKFMVLTTCMLDGEIPPSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQLLELYYNELTGNIPQELGNLTELVDVDMSVNLLRGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQELGKYSPMIVLDLSENQLSGPLPLDICRGGKLLYFLVLQNNISGEMPASLAKCESLLRFRVSFNQLVGTIPQGVLALPHVSIIDVAYNHLTGSISNSISQARNLSELFLERNMISGVIPPEISGATNLVKLDLSNNLLSGPIPSEIGNLKKLNQVTLQGNQLDSSIPNSFTSLKSLNVLDLSNNRLSGKIPESLSELFPIFLNFSNNQLSGPIPQSLIKQGLADSFSGNPNLCIPPAYFISSDQKFPICPQFSFSKRINSVWVIVIPLVIFIAAMTLFLKRRIATRKTSIIKNREALFSSFFHIQSFNENSILESMVENNIVGRGGSGTVYKIKLENGEIVAVKRLWNRTLTTKKHLSDKELKTEVETLGTIRHKNIVKLYSYFSDLNCSFLVYEYMPNGNLWDALHKGWIHLDWPTRRRIAEGTAQGLAYLHHDLSPPVIHRDIKSTNILLDSNYNPKVADFGIAKVLQGGSDLTDSVIAGTCGYLAPDYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDSKEGVLEILDERLKGLFRDEMIKALRIAIRCTYKNPRLRPAMGEVVQLLQELDSCKFDIQKGGKNMYDVTKLKYPFLFQSLRG 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9248057 9251125 + Sed0008337.1 Sed03g1443 706930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1443 950 PRINTS Leucine-rich repeat signature 456 469 - -
Sed03g1443 950 PRINTS Leucine-rich repeat signature 501 514 - -
Sed03g1443 950 SMART LRR_typ_2 163 189 IPR003591 -
Sed03g1443 950 SMART LRR_typ_2 237 261 IPR003591 -
Sed03g1443 950 SMART LRR_typ_2 501 525 IPR003591 -
Sed03g1443 950 SMART LRR_typ_2 477 500 IPR003591 -
Sed03g1443 950 SMART LRR_typ_2 285 309 IPR003591 -
Sed03g1443 950 Gene3D Ribonuclease Inhibitor 178 281 IPR032675 -
Sed03g1443 950 ProSitePatterns Protein kinases ATP-binding region signature. 650 672 IPR017441 GO:0005524(InterPro)
Sed03g1443 950 SUPERFAMILY Protein kinase-like (PK-like) 637 916 IPR011009 -
Sed03g1443 950 FunFam Receptor protein-tyrosine kinase CEPR1 285 571 - -
Sed03g1443 950 Pfam Protein kinase domain 647 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1443 950 FunFam Leucine-rich repeat receptor-like protein kinase 725 931 - -
Sed03g1443 950 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 Pfam Leucine Rich Repeat 503 525 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 Pfam Leucine Rich Repeat 141 160 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 FunFam Leucine-rich repeat receptor-like protein kinase 179 281 - -
Sed03g1443 950 Gene3D Transferase(Phosphotransferase) domain 1 725 935 - -
Sed03g1443 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1443 950 ProSiteProfiles Protein kinase domain profile. 644 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1443 950 ProSiteProfiles Leucine-rich repeat profile. 503 525 IPR001611 GO:0005515(InterPro)
Sed03g1443 950 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 181 280 - -
Sed03g1443 950 SMART serkin_6 644 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1443 950 FunFam receptor protein-tyrosine kinase CEPR1 627 724 - -
Sed03g1443 950 Gene3D Ribonuclease Inhibitor 291 570 IPR032675 -
Sed03g1443 950 Gene3D Ribonuclease Inhibitor 31 177 IPR032675 -
Sed03g1443 950 SUPERFAMILY L domain-like 60 369 - -
Sed03g1443 950 Gene3D Phosphorylase Kinase; domain 1 630 724 - -
Sed03g1443 950 SUPERFAMILY L domain-like 296 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0542 Sed-Chr3:3334781 Sed03g1443 Sed-Chr3:9248057 9.90E-73 dispersed
Sed03g1443 Sed-Chr3:9248057 Sed05g1525 Sed-Chr5:28939541 1.50E-166 dispersed
Sed14g1564 Sed-Chr14:23802633 Sed03g1443 Sed-Chr3:9248057 2.10E-45 dispersed
Sed01g1240 Sed-Chr1:9212252 Sed03g1443 Sed-Chr3:9248057 3.00E-20 wgd
Sed10g0775 Sed-Chr10:5481805 Sed03g1443 Sed-Chr3:9248057 3.90E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78891 PF00069 Pkinase 1.10E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1443 - - - 0.0