Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1471 ATGGAAGCTCCTCAAGTTTTCCACAAGAAACAATCCAATGCCTACTCTACTTCCCCCTTCGCCTCCGACGACCCCCCTGCTGGAGACCATTTCAGTGTCGAGGAGCTTTTCGACTTCTCCAACGACGACGACGACGACGACGACGACGCTGGAGTTGGTTTCTTCCATTCCGCCGACTCCTCCGCCGTCACCGCCGTCGAGAGTTGTAATTCTTCGTCGTTTTCGGGTTGCGAACCCGTTTCGTTCTTGGAGGATTCTGATTTACCCGACGCCCAATTCTCCGACCAACTCTGCATTCCGGAAGACGATTTAGCTGAGCTGGAATGGCTTTCAAATTTGGTGGAGGAACCATTTTCCAGCGAAGATATACAAAAATTAGAACTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCCTCACAAATCCGGCAACCCGCCACCACCCACGCCGCCGCAATTTTCAAACCGGAGATCGTTTCGGTTCCTGCGAAGGCGCGTAGCAAACGCTCACGCGCCGCCCCATCCAATTGGAACAACTCCCTCCTCCTCTCCCCCTCTCCGGCCACCTCCTCGTCGGAACCCGAAATCCCCGCCGGACCGCCGCCGCCGCCGCTAAAAATCAGAGCAACCCCGAAAGTGGCGGCGGCGAAAAAGAGAGACTCGTCGGAGGCGGGATTGTCCGCCGCCGTGGAGGGGCGGCGGTGCATGCACTGCTCCACCGACAAGACGCCGCAGTGGCGGACAGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGTTGGTACCCGAGTACCGACCCGCCGCCAGCCCCACCTTCGTCCTGACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGACAGAAGGAGATGGTCAGATCTCAACAGCCGCCACACCAGCCGTTGATTTTGGATCATCATCATCATCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCAGCAAAGCATGGCCCACGATTACCGGCAGCTTTTATGA 1047 56.64 MEAPQVFHKKQSNAYSTSPFASDDPPAGDHFSVEELFDFSNDDDDDDDDAGVGFFHSADSSAVTAVESCNSSSFSGCEPVSFLEDSDLPDAQFSDQLCIPEDDLAELEWLSNLVEEPFSSEDIQKLELITGVKVKPDEPSQIRQPATTHAAAIFKPEIVSVPAKARSKRSRAAPSNWNNSLLLSPSPATSSSEPEIPAGPPPPPLKIRATPKVAAAKKRDSSEAGLSAAVEGRRCMHCSTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQPPHQPLILDHHHHHQDMIFDSSNGDDYLIQQSMAHDYRQLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9361522 9363681 - Sed0007929.1 Sed03g1471 706958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1471 348 SMART GATA_3 229 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 1 31 - -
Sed03g1471 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 293 - -
Sed03g1471 348 PANTHER GATA TRANSCRIPTION FACTOR 30 301 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Sed03g1471 348 FunFam GATA transcription factor 227 311 - -
Sed03g1471 348 Pfam GATA zinc finger 235 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 165 211 - -
Sed03g1471 348 CDD ZnF_GATA 234 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 Gene3D - 229 279 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 171 193 - -
Sed03g1471 348 MobiDBLite consensus disorder prediction 194 208 - -
Sed03g1471 348 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 PIRSF Txn_fac_GATA_plant 16 325 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0905 Sed-Chr2:46512908 Sed03g1471 Sed-Chr3:9361522 4.70E-28 dispersed
Sed03g1471 Sed-Chr3:9361522 Sed09g1604 Sed-Chr9:39528717 1.20E-60 dispersed
Sed03g1471 Sed-Chr3:9361522 Sed05g1505 Sed-Chr5:28732694 3.60E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37863 PF00320 GATA 1.80E-15 CL0167 Sed TF