Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1479 ATGAGCTCAAAAACAGAATCCAAAGGCACAAAGAAAATGAAACGAAATGAAAAGGCAGAGCCAAATTACCGAGGAGTTCGGATGCGAAATTGGGGGAAATGGGTATCCGAAATCCGGGAGCCACGCAAGAAATCCCGCATTTGGTTGGGGACTTTCCCCACCGCCGAAATGGCGGCGCGTGCGCACGACGTGGCGGCGCTGAGCATCAAAGGCAGCGCCGCCATCCTCAACTTCCCCGACCTCGCCCACCTCCTCCCCCGCCCCCTCTCCCTCTCCCCGCACGACGTCCAAGCCGCCGCCGTCAAAGCCGCCCATATGCACCACTTCTCCGACCAAAATCACCATTCCGCCGCCGCCTCCTCTGACGACGACCACTCCGCCGACGACCTCACCGAGATCGTCCAGCTCCCCACCCTCCACGACGACTCCGGCGACTCCTTCGTCCTCCTCGACTCGCCGGAGGATCCCGGAGCGTGGCTCTACCCGCCGCCGTGGATGCCGAGCGTGGAGGACTGTTACGATGGTATGTTGGGAATGGGATTCATTTCCTCCACTTTCAAAGAATTGTTCTCCAATTATTGA 582 59.28 MSSKTESKGTKKMKRNEKAEPNYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSAAILNFPDLAHLLPRPLSLSPHDVQAAAVKAAHMHHFSDQNHHSAAASSDDDHSADDLTEIVQLPTLHDDSGDSFVLLDSPEDPGAWLYPPPWMPSVEDCYDGMLGMGFISSTFKELFSNY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9448969 9449858 - Sed0016231.1 Sed03g1479 706966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1479 193 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677(InterPro)
Sed03g1479 193 CDD AP2 21 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 FunFam Ethylene-responsive transcription factor 2 22 80 - -
Sed03g1479 193 Pfam AP2 domain 21 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 131 IPR051032 -
Sed03g1479 193 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1479 193 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1479 Sed-Chr3:9448969 Sed12g1829 Sed-Chr12:29557891 7.80E-38 dispersed
Sed03g0519 Sed-Chr3:3160158 Sed03g1479 Sed-Chr3:9448969 1.40E-84 transposed
Sed09g0555 Sed-Chr9:5829747 Sed03g1479 Sed-Chr3:9448969 7.70E-31 transposed
Sed12g1396 Sed-Chr12:11439726 Sed03g1479 Sed-Chr3:9448969 6.20E-50 transposed
Sed01g1267 Sed-Chr1:9448072 Sed03g1479 Sed-Chr3:9448969 3.40E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37864 PF00847 AP2 3.10E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1479 K09286 - csv:101206242 217.238