Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1479 | ATGAGCTCAAAAACAGAATCCAAAGGCACAAAGAAAATGAAACGAAATGAAAAGGCAGAGCCAAATTACCGAGGAGTTCGGATGCGAAATTGGGGGAAATGGGTATCCGAAATCCGGGAGCCACGCAAGAAATCCCGCATTTGGTTGGGGACTTTCCCCACCGCCGAAATGGCGGCGCGTGCGCACGACGTGGCGGCGCTGAGCATCAAAGGCAGCGCCGCCATCCTCAACTTCCCCGACCTCGCCCACCTCCTCCCCCGCCCCCTCTCCCTCTCCCCGCACGACGTCCAAGCCGCCGCCGTCAAAGCCGCCCATATGCACCACTTCTCCGACCAAAATCACCATTCCGCCGCCGCCTCCTCTGACGACGACCACTCCGCCGACGACCTCACCGAGATCGTCCAGCTCCCCACCCTCCACGACGACTCCGGCGACTCCTTCGTCCTCCTCGACTCGCCGGAGGATCCCGGAGCGTGGCTCTACCCGCCGCCGTGGATGCCGAGCGTGGAGGACTGTTACGATGGTATGTTGGGAATGGGATTCATTTCCTCCACTTTCAAAGAATTGTTCTCCAATTATTGA | 582 | 59.28 | MSSKTESKGTKKMKRNEKAEPNYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSAAILNFPDLAHLLPRPLSLSPHDVQAAAVKAAHMHHFSDQNHHSAAASSDDDHSADDLTEIVQLPTLHDDSGDSFVLLDSPEDPGAWLYPPPWMPSVEDCYDGMLGMGFISSTFKELFSNY | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9448969 | 9449858 | - | Sed0016231.1 | Sed03g1479 | 706966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1479 | 193 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | SUPERFAMILY | DNA-binding domain | 22 | 80 | IPR016177 | GO:0003677(InterPro) | |
Sed03g1479 | 193 | CDD | AP2 | 21 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 22 | 80 | - | - | |
Sed03g1479 | 193 | Pfam | AP2 domain | 21 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 4 | 131 | IPR051032 | - | |
Sed03g1479 | 193 | Gene3D | AP2/ERF domain | 22 | 80 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1479 | 193 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1479 | Sed-Chr3:9448969 | Sed12g1829 | Sed-Chr12:29557891 | 7.80E-38 | dispersed | |
Sed03g0519 | Sed-Chr3:3160158 | Sed03g1479 | Sed-Chr3:9448969 | 1.40E-84 | transposed | |
Sed09g0555 | Sed-Chr9:5829747 | Sed03g1479 | Sed-Chr3:9448969 | 7.70E-31 | transposed | |
Sed12g1396 | Sed-Chr12:11439726 | Sed03g1479 | Sed-Chr3:9448969 | 6.20E-50 | transposed | |
Sed01g1267 | Sed-Chr1:9448072 | Sed03g1479 | Sed-Chr3:9448969 | 3.40E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37864 | PF00847 | AP2 | 3.10E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1479 | K09286 | - | csv:101206242 | 217.238 |