Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1507 ATGAAGCGTAGCGCCTCCGAGTTGGTTCTTGATGAGCTCCTGGAAAAGACGACAGTGGGCGGTTTGAAAACGGAACCAGATGAAGAAGCGCCGATTCCAATTAGCCCTAAAAGAACCAAAAGCTTTCAGGATTCTGCCGACGCCTGCAGCTTCTTCCGCGATATCGATTTCAATTTCTTCTTCACCAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGGTCCTTTATGGGCACAGAATCTCACTCCTAAGCTTTCGACCATTTCAGCCACCATAGATTCCCAATCTTCTTTTGTGAGCAGCCCAACATCAGGCAGCAATATGATGAGCAGAGATCAGCACCAAAGAGACATCAACAACAACAACAACAACAACAGTGGATCCTCTGAGGATCAGTCTGATGATGAAATTGAAGCTGCCTCTTATCACCAAACCACTGACCCTCTTTCTTTGAAGAAAATCAGAAGAATGATCTCAAATAGAGACTCTGCTAGACGATCGAGACGACGAAAACAAGCTCATTTGACCGAACTCGAAAGTCAGATGAACCAGCTAAAAGTAGAAAATGAAGCATTGTTCAATCAGCTTCTAGATGCTTCTCAACAATACCGAGATGCCAATACAAACAACAGAGTGCTTAAATCAGATGTAAACGCAATGAGAGCCAAGGTAAAATTGGCTGAAGATACACTTGCTAGAGGCTCAATGAACTGCAACTTGAACCAGCTGCTACAGAGTCATTTGAGCACACCGCAGCCGCTAACAGCGTTGCCGCGGATGTCGAACATTGCATTGCCGCTCGATCTTCCTGGAGATGATGCTTCATACTCTTGCGTGACGACGATGTCGGGCCGGAATCCGACCACGGGGCTCACGAACTCAAATATGCATATCAAAAGTGGAATGGCTAGTGAGGCTGTTAGCTGTGTTTCTGGGATTTGGCCTAGAAATTAG 975 46.15 MKRSASELVLDELLEKTTVGGLKTEPDEEAPIPISPKRTKSFQDSADACSFFRDIDFNFFFTNNREIMDAIVNCGGGLAEGPLWAQNLTPKLSTISATIDSQSSFVSSPTSGSNMMSRDQHQRDINNNNNNNSGSSEDQSDDEIEAASYHQTTDPLSLKKIRRMISNRDSARRSRRRKQAHLTELESQMNQLKVENEALFNQLLDASQQYRDANTNNRVLKSDVNAMRAKVKLAEDTLARGSMNCNLNQLLQSHLSTPQPLTALPRMSNIALPLDLPGDDASYSCVTTMSGRNPTTGLTNSNMHIKSGMASEAVSCVSGIWPRN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9632838 9637385 - Sed0003818.1 Sed03g1507 706994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1507 324 FunFam BZIP transcription factor 157 208 - -
Sed03g1507 324 Pfam bZIP transcription factor 157 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1507 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 162 177 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1507 324 MobiDBLite consensus disorder prediction 100 137 - -
Sed03g1507 324 CDD bZIP_plant_GBF1 177 211 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1507 324 Gene3D - 158 214 - -
Sed03g1507 324 SMART brlzneu 155 219 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1507 324 MobiDBLite consensus disorder prediction 100 157 - -
Sed03g1507 324 SUPERFAMILY Leucine zipper domain 158 206 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1507 324 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 1 322 IPR044168 GO:0003700(InterPro)
Sed03g1507 324 Coils Coil 168 209 - -
Sed03g1507 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 157 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1507 Sed-Chr3:9632838 Sed08g1618 Sed-Chr8:31294741 3.50E-22 dispersed
Sed01g1291 Sed-Chr1:9641011 Sed03g1507 Sed-Chr3:9632838 9.70E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37866 PF00170 bZIP_1 5.20E-12 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1507 K25784 - csv:101210908 394.43