Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1507 | ATGAAGCGTAGCGCCTCCGAGTTGGTTCTTGATGAGCTCCTGGAAAAGACGACAGTGGGCGGTTTGAAAACGGAACCAGATGAAGAAGCGCCGATTCCAATTAGCCCTAAAAGAACCAAAAGCTTTCAGGATTCTGCCGACGCCTGCAGCTTCTTCCGCGATATCGATTTCAATTTCTTCTTCACCAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGGTCCTTTATGGGCACAGAATCTCACTCCTAAGCTTTCGACCATTTCAGCCACCATAGATTCCCAATCTTCTTTTGTGAGCAGCCCAACATCAGGCAGCAATATGATGAGCAGAGATCAGCACCAAAGAGACATCAACAACAACAACAACAACAACAGTGGATCCTCTGAGGATCAGTCTGATGATGAAATTGAAGCTGCCTCTTATCACCAAACCACTGACCCTCTTTCTTTGAAGAAAATCAGAAGAATGATCTCAAATAGAGACTCTGCTAGACGATCGAGACGACGAAAACAAGCTCATTTGACCGAACTCGAAAGTCAGATGAACCAGCTAAAAGTAGAAAATGAAGCATTGTTCAATCAGCTTCTAGATGCTTCTCAACAATACCGAGATGCCAATACAAACAACAGAGTGCTTAAATCAGATGTAAACGCAATGAGAGCCAAGGTAAAATTGGCTGAAGATACACTTGCTAGAGGCTCAATGAACTGCAACTTGAACCAGCTGCTACAGAGTCATTTGAGCACACCGCAGCCGCTAACAGCGTTGCCGCGGATGTCGAACATTGCATTGCCGCTCGATCTTCCTGGAGATGATGCTTCATACTCTTGCGTGACGACGATGTCGGGCCGGAATCCGACCACGGGGCTCACGAACTCAAATATGCATATCAAAAGTGGAATGGCTAGTGAGGCTGTTAGCTGTGTTTCTGGGATTTGGCCTAGAAATTAG | 975 | 46.15 | MKRSASELVLDELLEKTTVGGLKTEPDEEAPIPISPKRTKSFQDSADACSFFRDIDFNFFFTNNREIMDAIVNCGGGLAEGPLWAQNLTPKLSTISATIDSQSSFVSSPTSGSNMMSRDQHQRDINNNNNNNSGSSEDQSDDEIEAASYHQTTDPLSLKKIRRMISNRDSARRSRRRKQAHLTELESQMNQLKVENEALFNQLLDASQQYRDANTNNRVLKSDVNAMRAKVKLAEDTLARGSMNCNLNQLLQSHLSTPQPLTALPRMSNIALPLDLPGDDASYSCVTTMSGRNPTTGLTNSNMHIKSGMASEAVSCVSGIWPRN | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9632838 | 9637385 | - | Sed0003818.1 | Sed03g1507 | 706994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1507 | 324 | FunFam | BZIP transcription factor | 157 | 208 | - | - | |
Sed03g1507 | 324 | Pfam | bZIP transcription factor | 157 | 203 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1507 | 324 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 162 | 177 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1507 | 324 | MobiDBLite | consensus disorder prediction | 100 | 137 | - | - | |
Sed03g1507 | 324 | CDD | bZIP_plant_GBF1 | 177 | 211 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1507 | 324 | Gene3D | - | 158 | 214 | - | - | |
Sed03g1507 | 324 | SMART | brlzneu | 155 | 219 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1507 | 324 | MobiDBLite | consensus disorder prediction | 100 | 157 | - | - | |
Sed03g1507 | 324 | SUPERFAMILY | Leucine zipper domain | 158 | 206 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g1507 | 324 | PANTHER | BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED | 1 | 322 | IPR044168 | GO:0003700(InterPro) | |
Sed03g1507 | 324 | Coils | Coil | 168 | 209 | - | - | |
Sed03g1507 | 324 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 157 | 220 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1507 | Sed-Chr3:9632838 | Sed08g1618 | Sed-Chr8:31294741 | 3.50E-22 | dispersed | |
Sed01g1291 | Sed-Chr1:9641011 | Sed03g1507 | Sed-Chr3:9632838 | 9.70E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37866 | PF00170 | bZIP_1 | 5.20E-12 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1507 | K25784 | - | csv:101210908 | 394.43 |