Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1522 ATGTGGGGTCAGAAGAATGTAAAGGAAAGGAAAGAAGCAGTTGTGACGGGGAATCAATTGGTGGGAATCGCCATTGATAAGGACAAAGGAAGTCAAATCGCTCTCAAATGGGCCTCTGATAATCTCCTTCTCAAGGGCCAAACCGCCATTCTCATCCATGTCAATCTCAGATCTTCTTCTCTCACTTCCAATAAGGCACATGACAACGGCAATGTTTTGGTAAACAGCGAGATCGATCCGATCACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACCCGTAAAGATATATTCTGCAAAGATATAGTCATAGAAGATGTAGATGTTGCTAAAGCGTTGATCGAATATGCCACTAATGCTGGAATTGAGGCTTTGGTTGTGGGCACTACAACAAAAAATGGTTTCTTGAGATTCAAGACGACAGATATTCCAGGCAATGTTATAAAAGGAGCACCAGATTTCTGCAATGTTTATGTTATATCAAGAGGAAAAATCCAAACTATGCGGTCAGCCTCACGTCCTGCTCCGGCTTCTTCTCCTCTACGAAGTTTATTGCTGAGCCAATCTGGTATCAAATCGCAGTTATCAGAGCCACCAATTGCTCAGATTCAAAGACCTGAAAAGCCTCCAATTGAAGCGCCGCCTACATCACAGGAAAACATCGAATTCAGGTCGCCATTCACTAGGAAAGGTTACAATGGCAAAATGCCAGGGGAAATGAATCTGCCAGATACTGATATTTCTTTTGTTAGCTCGGGGAGGCCGAGTGTCGACAAATTGTTCCCTACATACTTTGACACCCCGGATTCAGGAAGGACCCCTTCACGACTGTCTAGTGGCACTGATTGCGATGTATATCATAGCTTCGAGTCACAGCAGTTCGGGCGCAAATCACTGGATGTAAACTATCCACCTGAATTTTCACCGATCTTCTCGGAAGGTGACAGATCATCGAATTCGTCACAGAGTATTGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCGAAGCAAAAGGCGATAGAGCTTCAACGATGGAAATCCGAGGAAGAACGGAGAATAGAGGAGGCGAGACTTGCAGAGGAAGCTGCATTAATGATCGTCGAGCAGGAAAAGGCAAAGTCTCGAGCTGCTATTGAGGCTGCTGAAGCTGCTAAAAGAATCGCAGAGTTGGAAGCACAAAAAAGAGTTAATGCGGAAAGGAAAGCATTCAAGGAATCAGAAGAGAAAAAGAAGGCATTGGATGCTTTGGCGAACAATGATGTCAGGTATCGGAAATACTCAATAGAGGAGATCGAAACTGCTACGGAGTTCTTTGCGGAATCTTTGAAGATTGGAGAGGGAGGTTATGGACCCGTTTACAAGGGTTATTTGGACCACACACCTGTTGCAATTAAGGTCTTACGTCCTGATGCAGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTTGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCGTGCCCCGAGTATGGCTGCTTGGTCTATGAATTCATGGCAAATGGTAGCTTGGATGACTGCCTCTTTAGACGGGGAGTAAACTCGAAACCTCTATCTTGGCAACTTAGATTCAAAATTGCAGCTGAAATTGGTACTAGCTTGTTGTTCCTCCACCGGGCTAAGCCCGAGCCACTCGTGCACCGTGATTTGAAGCCAGGCAACATCTTGCTTGACCGCAACTACATTAGTAAGATTAGCGACGTTGGTTTGGCCAGGCTGGTTCCCCCATCTGTAGCAGATAGTGTGACACAGTATAGAATGACTTCAACTGCTGGCACATTCTGCTATATCGATCCCGAGTATCAGCAAACCGGAATGCTCGGTGTAAAGTCAGACATATATTCTTTGGGAATCATGTTTTTGCAGATGATTACTGGGAAGGCACCCATGGGATTGACTCACCATGTGGAAAGAGCTATTCAGAAAGGGAGTTTGTCTGAAGTTCTTGATCCATCTGTTATTGATTGGCCTGCTGAAGAAACCTTGTGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGATCGGCCGGATTTAAGAAAGGTCATTCTCCCCGAACTGATCAGATTACGATCGATAGCCGAAGCTAGCATGTACTCGCCGGCGACAAATGGTGTTAGCAGTCCTGTATTCAGCGCCAGTCAGGATTCTCTCAGTAAAGATGTAACCGGCGACACTTTATCCTCTCAATCTCGCAAGAGCTCGGAAAACTCATCGCGCTCGTCATCATAG 2340 45.47 MWGQKNVKERKEAVVTGNQLVGIAIDKDKGSQIALKWASDNLLLKGQTAILIHVNLRSSSLTSNKAHDNGNVLVNSEIDPITRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYATNAGIEALVVGTTTKNGFLRFKTTDIPGNVIKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQSGIKSQLSEPPIAQIQRPEKPPIEAPPTSQENIEFRSPFTRKGYNGKMPGEMNLPDTDISFVSSGRPSVDKLFPTYFDTPDSGRTPSRLSSGTDCDVYHSFESQQFGRKSLDVNYPPEFSPIFSEGDRSSNSSQSIEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALMIVEQEKAKSRAAIEAAEAAKRIAELEAQKRVNAERKAFKESEEKKKALDALANNDVRYRKYSIEEIETATEFFAESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRGVNSKPLSWQLRFKIAAEIGTSLLFLHRAKPEPLVHRDLKPGNILLDRNYISKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQMITGKAPMGLTHHVERAIQKGSLSEVLDPSVIDWPAEETLCFAELALKCAELRRKDRPDLRKVILPELIRLRSIAEASMYSPATNGVSSPVFSASQDSLSKDVTGDTLSSQSRKSSENSSRSSS 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9712282 9717174 + Sed0017471.1 Sed03g1522 707009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1522 779 SMART serkin_6 459 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1522 779 Gene3D Phosphorylase Kinase; domain 1 437 531 - -
Sed03g1522 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 162 - -
Sed03g1522 779 Pfam Protein kinase domain 462 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1522 779 Coils Coil 385 421 - -
Sed03g1522 779 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 431 531 - -
Sed03g1522 779 PANTHER OS02G0152300 PROTEIN 23 775 IPR051348 -
Sed03g1522 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1522 779 ProSiteProfiles Protein kinase domain profile. 459 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1522 779 Gene3D Transferase(Phosphotransferase) domain 1 532 736 - -
Sed03g1522 779 SUPERFAMILY Protein kinase-like (PK-like) 443 719 IPR011009 -
Sed03g1522 779 Pfam Universal stress protein family 21 153 IPR006016 -
Sed03g1522 779 Coils Coil 318 345 - -
Sed03g1522 779 Gene3D HUPs 19 161 IPR014729 -
Sed03g1522 779 CDD STK_N 20 164 - -
Sed03g1522 779 MobiDBLite consensus disorder prediction 197 219 - -
Sed03g1522 779 MobiDBLite consensus disorder prediction 744 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1522 Sed-Chr3:9712282 Sed13g2108 Sed-Chr13:25785078 1.60E-286 dispersed
Sed03g1522 Sed-Chr3:9712282 Sed03g1523 Sed-Chr3:9712282 0.00E+00 tandem
Sed03g1522 Sed-Chr3:9712282 Sed05g1633 Sed-Chr5:30232090 2.60E-289 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78896 PF00069 Pkinase 2.00E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1522 - - - 0.0