Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1523 ATGTGGGGTCAGAAGAATGTAAAGGAAAGGAAAGAAGCAGTTGTGACGGGGAATCAATTGGTGGGAATCGCCATTGATAAGGACAAAGGAAGTCAAATCGCTCTCAAATGGGCCTCTGATAATCTCCTTCTCAAGGGCCAAACCGCCATTCTCATCCATGTCAATCTCAGATCTTCTTCTCTCACTTCCAATAAGGCACATGACAACGGCAATGTTTTGGTAAACAGCGAGATCGATCCGATCACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACCCGTAAAGATATATTCTGCAAAGATATAGTCATAGAAGATGTAGATGTTGCTAAAGCGTTGATCGAATATGCCACTAATGCTGGAATTGAGGCTTTGGTTGTGGGCACTACAACAAAAAATGGTTTCTTGAGAAGATTCAAGACGACAGATATTCCAGGCAATGTTATAAAAGGAGCACCAGATTTCTGCAATGTTTATGTTATATCAAGAGGAAAAATCCAAACTATGCGGTCAGCCTCACGTCCTGCTCCGGCTTCTTCTCCTCTACGAAGTTTATTGCTGAGCCAATCTGGTATCAAATCGCAGTTATCAGAGCCACCAATTGCTCAGATTCAAAGACCTGAAAAGCCTCCAATTGAAGCGCCGCCTACATCACAGGAAAACATCGAATTCAGGTCGCCATTCACTAGGAAAGGTTACAATGGCAAAATGCCAGGGGAAATGAATCTGCCAGATACTGATATTTCTTTTGTTAGCTCGGGGAGGCCGAGTGTCGACAAATTGTTCCCTACATACTTTGACACCCCGGATTCAGGAAGGACCCCTTCACGACTGTCTAGTGGCACTGATTGCGATGTATATCATAGCTTCGAGTCACAGCAGTTCGGGCGCAAATCACTGGATGTAAACTATCCACCTGAATTTTCACCGATCTTCTCGGAAGGTGACAGATCATCGAATTCGTCACAGAGTATTGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCGAAGCAAAAGGCGATAGAGCTTCAACGATGGAAATCCGAGGAAGAACGGAGAATAGAGGAGGCGAGACTTGCAGAGGAAGCTGCATTAATGATCGTCGAGCAGGAAAAGGCAAAGTCTCGAGCTGCTATTGAGGCTGCTGAAGCTGCTAAAAGAATCGCAGAGTTGGAAGCACAAAAAAGAGTTAATGCGGAAAGGAAAGCATTCAAGGAATCAGAAGAGAAAAAGAAGGCATTGGATGCTTTGGCGAACAATGATGTCAGGTATCGGAAATACTCAATAGAGGAGATCGAAACTGCTACGGAGTTCTTTGCGGAATCTTTGAAGATTGGAGAGGGAGGTTATGGACCCGTTTACAAGGGTTATTTGGACCACACACCTGTTGCAATTAAGGTCTTACGTCCTGATGCAGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTTGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCGTGCCCCGAGTATGGCTGCTTGGTCTATGAATTCATGGCAAATGGTAGCTTGGATGACTGCCTCTTTAGACGGGGAGTAAACTCGAAACCTCTATCTTGGCAACTTAGATTCAAAATTGCAGCTGAAATTGGTACTAGCTTGTTGTTCCTCCACCGGGCTAAGCCCGAGCCACTCGTGCACCGTGATTTGAAGCCAGGCAACATCTTGCTTGACCGCAACTACATTAGTAAGATTAGCGACGTTGGTTTGGCCAGGCTGGTTCCCCCATCTGTAGCAGATAGTGTGACACAGTATAGAATGACTTCAACTGCTGGCACATTCTGCTATATCGATCCCGAGTATCAGCAAACCGGAATGCTCGGTGTAAAGTCAGACATATATTCTTTGGGAATCATGTTTTTGCAGATGATTACTGGGAAGGCACCCATGGGATTGACTCACCATGTGGAAAGAGCTATTCAGAAAGGGAGTTTGTCTGAAGTTCTTGATCCATCTGTTATTGATTGGCCTGCTGAAGAAACCTTGTGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGATCGGCCGGATTTAAGAAAGGTCATTCTCCCCGAACTGATCAGATTACGATCGATAGCCGAAGCTAGCATGTACTCGCCGGCGACAAATGGTGTTAGCAGTCCTGTATTCAGCGCCAGTCAGGATTCTCTCAGTAAAGATGTAACCGGCGACACTTTATCCTCTCAATCTCGCAAGAGCTCGGAAAACTCATCGCGCTCGTCATCATAG 2343 45.45 MWGQKNVKERKEAVVTGNQLVGIAIDKDKGSQIALKWASDNLLLKGQTAILIHVNLRSSSLTSNKAHDNGNVLVNSEIDPITRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYATNAGIEALVVGTTTKNGFLRRFKTTDIPGNVIKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQSGIKSQLSEPPIAQIQRPEKPPIEAPPTSQENIEFRSPFTRKGYNGKMPGEMNLPDTDISFVSSGRPSVDKLFPTYFDTPDSGRTPSRLSSGTDCDVYHSFESQQFGRKSLDVNYPPEFSPIFSEGDRSSNSSQSIEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALMIVEQEKAKSRAAIEAAEAAKRIAELEAQKRVNAERKAFKESEEKKKALDALANNDVRYRKYSIEEIETATEFFAESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRGVNSKPLSWQLRFKIAAEIGTSLLFLHRAKPEPLVHRDLKPGNILLDRNYISKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQMITGKAPMGLTHHVERAIQKGSLSEVLDPSVIDWPAEETLCFAELALKCAELRRKDRPDLRKVILPELIRLRSIAEASMYSPATNGVSSPVFSASQDSLSKDVTGDTLSSQSRKSSENSSRSSS 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9712282 9717174 + Sed0017471.2 Sed03g1523 707010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1523 780 PANTHER OS02G0152300 PROTEIN 23 776 IPR051348 -
Sed03g1523 780 Gene3D Transferase(Phosphotransferase) domain 1 533 737 - -
Sed03g1523 780 MobiDBLite consensus disorder prediction 745 780 - -
Sed03g1523 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1523 780 MobiDBLite consensus disorder prediction 197 220 - -
Sed03g1523 780 Gene3D Phosphorylase Kinase; domain 1 438 532 - -
Sed03g1523 780 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 161 - -
Sed03g1523 780 Coils Coil 386 422 - -
Sed03g1523 780 Pfam Universal stress protein family 21 153 IPR006016 -
Sed03g1523 780 SUPERFAMILY Protein kinase-like (PK-like) 444 720 IPR011009 -
Sed03g1523 780 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 432 532 - -
Sed03g1523 780 CDD STK_N 20 165 - -
Sed03g1523 780 Pfam Protein kinase domain 463 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1523 780 SMART serkin_6 460 725 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1523 780 Coils Coil 319 346 - -
Sed03g1523 780 ProSiteProfiles Protein kinase domain profile. 460 725 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1523 780 Gene3D HUPs 19 162 IPR014729 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1523 Sed-Chr3:9712282 Sed05g1633 Sed-Chr5:30232090 1.80E-290 dispersed
Sed03g1522 Sed-Chr3:9712282 Sed03g1523 Sed-Chr3:9712282 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78897 PF00069 Pkinase 2.00E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1523 - - - 0.0