Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1531 ATGGCGGCACCGGTTTTGGTTGATGGGAAGGGGAAGAGGAATATTGAGAGTTTGGTGTCTGCTGCTAGGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGATTTAGGGTTTTCGTTGCAGAAAGCTGGGTCCAGATTGGAGGAGATTGGCGTTAGATTGCCGACTTTGGAAGCGGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCTCTTGTCGCGGTTGGTGGCCATATTAATCGAGCTGTTGGCCCGGCCGCGGCGGTGCTTAAGGTTTTCGATGCCGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCGAGGAATGATCTCCCTGGTTATTTGTCGGTGATGAAGCGTATGGAAGAGGCATTGAGGTTTTTGGGGGATAATTGTGGATTGGCTATTCAGTGGTTGGAGGATATTGTTGAGTATTTGGAAGATAATACTGTTGCTGATGAGAGATATCTTGCGAATTTGAAGAAATCTTTGAAGAATTTGAGGGATTTGCAGAGTGACGAGGGGAGGATTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTAGAGAATGAGTTTAGGCGTCTGTTAACGGAGCACAGTGTGCCCCTTCCCATGTCTTCTTCCCCGTCGCTCGGTGAGCAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTTGTTCAGAAATTGCAGGCTATTCTTGGGAGATTGATCGCTAATAAAAGACTTGAGAAATGCATAGCCATTTATGTAGAGGTTCGGAGTTCTAATGTTAGGGCTAGTTTGCAGGTGCTTGATTTGGATTACTTGGAGTTGTCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAGGGTTACATTGCAAAATGGGGAAGACACTTGGAGTTTGCTGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGATGTTTTTGAGAGGATTGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGCATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAATGATCCTATTAAGCTGTTGAAGTTGTTAGATATATTTGCATCCTTAAACAAACTGAGACTGGATTTCAATAGGCTTTTCGGTGGTGCTGCGTGTTTGGAAATTCAAAACCTGACTAGGGATCTCATCAAGAGGGTTATCAATGGTGTGGCCGAGATTTTCTGGGAACTTCTGGTTCAGGTGGAGTTACAGAGGCGAAATTCTCCACCTTCAGACGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAATTGCTGAGTGATGATTATCGGCCGATCTTAACCCAAGCCCTCGTCATTCATCGGAGTTGGAAGAAAGAAAAGTTTCAAGAGGGTCTTCTTATCAGCGAGGTTATGAACCTTGTTAAAGCCATTGAGCAGAATTTGGAAACTTGGATAAAGGCTTATGAAGATTCTATCTTGTCAAATTTTTTTGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGCCGGAGAATTAATGGGAGATAAATTAAAGGAACATGAACAATACAAGGATTACTATTCTGCAGTTTTCTTAAGGGATAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGGGAGGGTTTGATTATGTTCTCGGGTGGGCGAGCAACTGCTCGGGATCTTGTTAAGAAACGTCTAAAGACATTCAATGAAGCTTTAGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATGACTGACAAAGATTTGAGGGAGAAGACATGCCAGCTTATAGTTCAAACGATCGTGCCCGTATACCGCAGCTACATGCAGAATTATGGTCCCCTCGTTGAGCAAGATGCAAGTTCTAGCAAGTATGCGAAGTTCACCGTACAGAATCTGGAGAAAATGTTACTGTCCCTTTATCAACCAAAGCCGCTAAGGTTCAACAGCCTTAATGTTAGGCAGACCAGTGGGAAATTCAGCAATGGTGCAACAGATTTTCGTCGTGCAAACTCCATGGCTATGTAA 2049 43.58 MAAPVLVDGKGKRNIESLVSAARSLKASLEKSRDLGFSLQKAGSRLEEIGVRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVMKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADERYLANLKKSLKNLRDLQSDEGRIRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSPSLGEQACIAPSPLPVTVVQKLQAILGRLIANKRLEKCIAIYVEVRSSNVRASLQVLDLDYLELSVSEFNDVQSIEGYIAKWGRHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVINGVAEIFWELLVQVELQRRNSPPSDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLISEVMNLVKAIEQNLETWIKAYEDSILSNFFAMNNHWHLYKHLKGTKAGELMGDKLKEHEQYKDYYSAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEALEDMYKKQSNWVMTDKDLREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKFTVQNLEKMLLSLYQPKPLRFNSLNVRQTSGKFSNGATDFRRANSMAM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9740991 9744001 + Sed0017182.1 Sed03g1531 707018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1531 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed03g1531 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Sed03g1531 682 Gene3D Exocyst complex component Exo70 137 654 - -
Sed03g1531 682 Pfam Exocyst complex component Exo70 N-terminal 82 199 - -
Sed03g1531 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Sed03g1531 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 649 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1531 Sed-Chr3:9740991 Sed04g2352 Sed-Chr4:37014516 1.70E-172 dispersed
Sed01g1298 Sed-Chr1:9706791 Sed03g1531 Sed-Chr3:9740991 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1531 K07195 - csv:101207478 1234.94