Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1567 ATGGCTGTCAAAACAGCACATTCATTCAGAGATCGGACTCAGGAATTCCAGAACATTACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGGACGGGAACAGCGGGACCAAGTGGTGGTTCGAAATCAGAAGAGCAGCGTTCTGCTGTGGCCCTGCAGTCTGAATTTAATAAGAGGGCTTCGAAGATTGGGTTAGGGATACACCAAACGTCTCAGAAACTAGCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGATAACCGCACTTATTAAGCAGGACATTACAACATTGAACTCCGCAGTTGTAGATCTTCAGCTTGTCTGCAACTCTAGAAATGAAAGTGGAAACATGTCCAGTGATACTACTAGTCATTCAACCACTGTGGTTGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTCCTAACCATGCGAACAGAAAATTTGAAGGTCCATGAGAACAGAAGACAACTATTTTCTTCTACTGCATCAAAGGAATCTACAAATCCTTTTGTGCGCCAACGCCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGCGCACCTCCTCCTCCATGGGCCAAAGCGTCTACATCTTTTTCCAAAACTTCTCCCGGAAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAACATCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCGGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGGGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCAATCAGGATCGACGAGAACATGGACGATTCTCTGGCAAATGTGGAGGGGGCTCAGGGAGCTTTGCTCAAGTATCTAAACAGTATATCATCGAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTTATGGTTTTCCTATTTTTTGTGGCTTAG 1020 43.53 MAVKTAHSFRDRTQEFQNITERLKKSFSSGTGTAGPSGGSKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQEITALIKQDITTLNSAVVDLQLVCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQHQQQQMVPLQDTYMQSRAEALQNVESTIHELGNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9893016 9899783 + Sed0020602.2 Sed03g1567 707054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1567 339 MobiDBLite consensus disorder prediction 170 190 - -
Sed03g1567 339 SUPERFAMILY t-snare proteins 52 302 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed03g1567 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Sed03g1567 339 SMART tSNARE_6 242 309 IPR000727 -
Sed03g1567 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Sed03g1567 339 MobiDBLite consensus disorder prediction 168 243 - -
Sed03g1567 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed03g1567 339 Gene3D - 47 302 - -
Sed03g1567 339 Pfam SNARE domain 283 335 IPR000727 -
Sed03g1567 339 CDD SNARE_syntaxin5 250 328 - -
Sed03g1567 339 PANTHER SYNTAXIN 54 328 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed03g1567 339 MobiDBLite consensus disorder prediction 20 48 - -
Sed03g1567 339 MobiDBLite consensus disorder prediction 207 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1325 Sed-Chr1:9894355 Sed03g1567 Sed-Chr3:9893016 3.30E-159 dispersed
Sed01g1326 Sed-Chr1:9894355 Sed03g1567 Sed-Chr3:9893016 9.00E-159 dispersed
Sed03g1567 Sed-Chr3:9893016 Sed07g2558 Sed-Chr7:41119183 2.00E-73 dispersed
Sed03g1566 Sed-Chr3:9893016 Sed03g1567 Sed-Chr3:9893016 1.50E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1567 K08490 - csv:101203633 513.457