Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1568 ATGGACGTTCCTTCAGTGGAGCTAAATTGTGAAAGCGAAGGAGACTCTTACCCTTTATTAATGGCACAGCCAGAAAATTTTAGCAGCAGTGAGCATATCATTGATATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGATAGGAATTCAAATGGTTTAAATTCATCACAGCCTGAGGATAGACCTTCAAGTAGTACACGGGTTTCCTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGAAGTCGTAGAAGTCCATTGAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTACTGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGAATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTGCTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAGGAGTCTCTTCAATCCAGTCAGAATTCCACTCGCATTAATGTACCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGACATGGAAGAACTTCATCATCCTGTTCCATCCCCCAGAGGCAGTCAAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTCGGTAACGTTTGGATCTTTGGCGGGCATACATCGGCCTCTGATGCACCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATAGGTTATGCCATGCCCTTCATTCTCTGTGTAACCATCTGCTGTTGCCTACCTTGTTTAATTTCCATCCTCGGGTTTAGAGAGGACATGGCGCAGACCCGAGGAGCCACGACAGAATCTATTAATGCATTGCCGATATACAAGTTTAAGATGAAGAAGAGTAGAAATGGAGATGATAGAGAAAACAATTCCGGAGCAGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGCCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCCTGTTCTCACTTCTTCCACAAAGAATGTGTGGATAAATGGTTGAAGATCAACGCGCTGTGCCCGCTTTGCAAAAACAACGTCGACGAGAGTAACAATGCCTCTATTGATGGGACAAACTGA 1239 43.34 MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQPEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9906589 9912237 - Sed0000396.1 Sed03g1568 707055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1568 412 SMART ring_2 356 396 IPR001841 -
Sed03g1568 412 FunFam E3 ubiquitin-protein ligase 339 406 - -
Sed03g1568 412 SUPERFAMILY RING/U-box 348 402 - -
Sed03g1568 412 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Sed03g1568 412 MobiDBLite consensus disorder prediction 35 102 - -
Sed03g1568 412 MobiDBLite consensus disorder prediction 35 91 - -
Sed03g1568 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 411 IPR013083 -
Sed03g1568 412 Pfam Ring finger domain 355 397 IPR001841 -
Sed03g1568 412 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1330 Sed-Chr1:9909059 Sed03g1568 Sed-Chr3:9906589 5.60E-206 dispersed
Sed01g1331 Sed-Chr1:9909059 Sed03g1568 Sed-Chr3:9906589 5.60E-206 dispersed
Sed03g1568 Sed-Chr3:9906589 Sed07g2751 Sed-Chr7:42582017 1.60E-48 dispersed
Sed03g1568 Sed-Chr3:9906589 Sed03g1569 Sed-Chr3:9906589 5.40E-238 tandem
Sed03g0783 Sed-Chr3:4734671 Sed03g1568 Sed-Chr3:9906589 2.10E-09 transposed
Sed01g1328 Sed-Chr1:9909059 Sed03g1568 Sed-Chr3:9906589 5.60E-206 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1568 - - - 0.0