Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1580 ATGTCCACCGCCGCCGTGGTTGCACATTCCAGCTCCTGGGCTCGCGCTCTCATCCACATCTCTCCCTACACTTTCTCCGCCCTCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATTACCGGAAGCAGTTTGATCGGTGCGGCCATTAAAGCTCCTCGTATTACTTCCAAGAACTTGATCAGTGTGATTTTCTGTGAGGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTATCAGCCTCTCAGTTATATGCCCCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCGTCTGGAATCATAGTTGGTTTCGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCGCTATCAGATGCTCAAAACTCCTCTCTCTTTGTGAAGATTCTTGTAATTGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGGATTATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACTGGTTGA 549 49.54 MSTAAVVAHSSSWARALIHISPYTFSALGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQLYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10062575 10064342 + Sed0021950.1 Sed03g1580 707067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1580 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Sed03g1580 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 175 - GO:0016021(PANTHER)
Sed03g1580 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Sed03g1580 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1580 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed03g1580 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Sed03g1580 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Sed03g1580 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Sed03g1580 182 Gene3D - 23 177 IPR035921 -
Sed03g1580 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1580 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1580 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g1580 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1346 Sed-Chr1:10048730 Sed03g1580 Sed-Chr3:10062575 2.50E-86 wgd
Sed13g2038 Sed-Chr13:25242960 Sed03g1580 Sed-Chr3:10062575 1.10E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1580 K03661 - csv:101221052 326.25