Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1588 ATGAGCCAAGGTCCAATTCCATCAAACCTCCTAGGCGACCAAGCGTCGCCAGACTGGATGAGCAAAGGCGACAACGCATGGCAGATGACGGCCGCGACACTGGTCGGGCTACAAAGCGTACCGGGTCTAATAATCCTATACGGCGGGGCAGTGAAAAAGAAATGGGCGATAAACTCAGCGTTCATGGCTCTATACGCGTTCGCATGCGTGCTAGTGTGCTGGGTCGGGTGGGGGTACCGGCTGTCGTTCGGGGACAAGCTGGCCCCGTTCTGGGGGAAGCCGAACCTGCCGTCCGCGACCATGGTGTTCTTCCAGTTCGTGTTTGCGGCGATCACGCTGGTTTTGATAGCCGGGGCTCTGCTCGGGCGGATGAACTTCTACGCTTGGATGATGTTCGTGCCACTTTGGCTGACATTTTCTTATACTTTTGTGGCGTTTAGTATTTGGAGTCCTCAGGGGTTTTTCTTTAAGATGGGACTTATTGATTATTCTGGTGGTTATGTTATTCATTTGTCCTCTGGTGTTGCCGGCTTTACTGCTGCTTATTGGGTTGGGCCCCGGCTTTCGAAAGACAGAGAAAGCTTCCCGCCAAACAACATTCTTCTGATGCTGGCCGGAGCCGGGTTGCTGTGGATGGGGTGGACCGGGTTCAACGGCGGGGACCCGTATGCCGCCAACGTGGACGCCTCGCTGGCGGTTCTGAACACCCACGTGTGCACCGCCACCAGCCTGTTGACGTGGCTCATTTTCGACATCGTGTTCTTTAGAAAGCCCTCCGTCATCGGCGCCGTCCAAGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCCATTATAATGGGACTCCTATCAGGCTCAATTCCATGGTTCACAATGATGGTGGTGGACGACACAATGGCCGTGCTCCACACCCACGCCATCGCGGGCAGCCTCGGCGGAATTCTCAGCGGCATCTTCGCCGAGCCCCGCCTCAACTTCGTCTACTACGGTGCCTACAACAAGTACGTTGGCCTATTCTACGGTTTCAACACAAAGCAAGTCAAGCTCGGTTTTCGCCAAATCGGTGTCCAACTCCTTGGAATCCTCTTTGTCACGATCATAAACGTCATCGTCACTAGCCTCATATGCGTCCTACTTCAATACATTGTCCCACTCCGAATGTCGGAGGAGGACATGGCGATCGGCGACGAGGCTGCCCATGGCGAAGAGGCCTATGCCATTTGGGGTCAAGGCGAGAAGATGGATGCTTCTAAATACGACGTCGAGGTCTCAGCCTCGAAGTATAAGCACGGGGACCATATTGAAATGGCATGA 1341 54.96 MSQGPIPSNLLGDQASPDWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKPNLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMMFVPLWLTFSYTFVAFSIWSPQGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANVDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNTKQVKLGFRQIGVQLLGILFVTIINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDASKYDVEVSASKYKHGDHIEMA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10090648 10094478 + Sed0013498.1 Sed03g1588 707075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1588 446 PANTHER AMMONIUM TRANSPORTER MEP2 17 425 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Sed03g1588 446 Gene3D Ammonium transporter AmtB like domains 9 434 IPR029020 -
Sed03g1588 446 PRINTS Rhesus blood group protein signature 105 121 IPR002229 GO:0005886(InterPro)
Sed03g1588 446 PRINTS Rhesus blood group protein signature 287 305 IPR002229 GO:0005886(InterPro)
Sed03g1588 446 PRINTS Rhesus blood group protein signature 201 219 IPR002229 GO:0005886(InterPro)
Sed03g1588 446 PRINTS Rhesus blood group protein signature 232 254 IPR002229 GO:0005886(InterPro)
Sed03g1588 446 SUPERFAMILY Ammonium transporter 19 396 - -
Sed03g1588 446 NCBIfam ammonium transporter 24 414 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed03g1588 446 ProSitePatterns Ammonium transporters signature. 162 187 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed03g1588 446 Pfam Ammonium Transporter Family 26 414 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0192 Sed-Chr2:33539435 Sed03g1588 Sed-Chr3:10090648 2.20E-145 dispersed
Sed03g1588 Sed-Chr3:10090648 Sed10g1041 Sed-Chr10:9215662 2.80E-147 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1588 K03320 - csv:101210590 800.045