Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1589 ATGGGGGCTGCGTTTGAGGGAGTAGCAAAAGATTTCAAAGGGAGAGCAGCCTGCTATAAACAGGATTGGATATGTGGACTAGGTTCAGGCGCCAGGATTTTAGCTCCTACTATGTACATCTTCTTCGCCTCTGCTCTTCCTGTTATCGCCTTCGGAGAGCAACTTAGTAGGGATACAGGTGAAAATTTGAGCACAGTGGAAACATTAGCCTCAACGGCGATTTGTGGAATTATCCATTCAATATTTGGAGGACAGCCATTGCTGATTGTAGGAGTGGCAGAACCAACAGTTATAATGTACACTTACTTGTACGGTTTCTGCAAAAGCCGACCCGATTTAGGCGGCAAGCTCTTTATAGCCTGGGCTGGATGGGTGTGCATTTGGACAGGCTTCTTCTTGATTCTCCTTGCAATCTTTAATGCTTGCACCATTATCATCAAGTTTACTAGAGTTGCTGGTGAATTGTTTGGCATGCTTATTTCTGTTCTTTTCTTCCAAGAGGCAATTAAGGGAATTAGAAGCGAGTTCAAGATGCCAAAGTCAGAAGATCCAAACCTATTGGAGTACCAATTTGAATGGTTGTTTGCAAATGGATTGCTTGCCATCATTTTCGCCAGCGGTGTTCTCTTTACGTCGCTGAAAACTCGACGTGCAAGATTGTGGAAATATGGCACAGGCTGGTTTCGGAGTTTAATCGCAGAATACGGTGTTCCGCTTATGGTCGTGTTATGGACAGCATTGTCTTATGGAGTTCCCAGCAAAGTCCCAGAGGGAGTTCCAAGGAGGCTCTTTTGTCCATTACCTTGGGAGCCAGCCTCATTGTACCACTGGACTGTCATCAAGGACATGGGGAAGATTCCATTTATTTACATCTTAGCTGCTTGTCTGCCAGCCATGATGATAGCAGGCTTATACTTCTTTGACCATAGTGTTGCATCACAAATGGCTCAACAGAAAGAGTACAATCTTCAAAACCCCTCTTCATATCATTATGATATCTTCTTGCTAGGGATTATGACTTTGATTTGTGGATTGCTTGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCTCCTATGCACACGAAGAGTCTCTCCATGCTTAATCGGCAGCAAATTCGTCGAAAAATGATACGAAATGCAAAGGAATGTATCAAACTAAAAGCATCCAACTCTGAAATTTATGGAAGGATGCAGGCTGCATTCATTGAAATGGATGCATCTCCATCTCCTAAAGAGCTAGAAACCTTGGCGAAGGCGGTAAAGAGCGTGGAGGACAGTGATCGGAAGGTAAAATTTGACGCAGAGAAGACTATAGATCCATATTTGCCTGTCCGTGTGAATGAACAAAGATTGAGCAACTTGCTGCAGTCCCTCCTTGTGGGGTTATCAATATTTTTTATCCCTTTAATGAAAAGGATACCTACTTCAGTTCTTTGGGGTTACTTTGCTTACATGGCTATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGATTGTTGCTGCTCCTCATTACGCCCGGACGGCGTTTCAAGGTGTTGGAGGGTTCTCATTTATCTTTCGTCGAATCGGTGCCATTCAAGGTCATTGTGTCGTTTACGCTCTTTCAGTTTGCGTATTTCTTGTTGTGCTTTGGGATAACATGGATACCTGTAGCTGGGATTTTGTTCCCTCTGCCATTTTTCCTTCTCATTAGCATAAGAGAACATGTGCTCCCAAGGTTCTTCCAGCCTCACCATCTTCAAGAGCTAGATGCTGCAGAGTATGAGGAGATTCCAGCCGGCGCTCGACATCGAAATCGCAGTACAGTTTCGCGTACTCTCTCGAATTCTCCATTGCTTCGTTTCGCTGAAAATGAGACAACGGATTCAAACGCGGACGAGAATATCATAGAATACTACGACTCGGAGGTATTAGATGAGATGACAACTCATAGAGGAGAAATATTGAAGTTCAGGAATAATAGGAAAGACATTATTTTTTCTTCTCATACAGTGGCGCTGCTAACTTAA 2013 43.72 MGAAFEGVAKDFKGRAACYKQDWICGLGSGARILAPTMYIFFASALPVIAFGEQLSRDTGENLSTVETLASTAICGIIHSIFGGQPLLIVGVAEPTVIMYTYLYGFCKSRPDLGGKLFIAWAGWVCIWTGFFLILLAIFNACTIIIKFTRVAGELFGMLISVLFFQEAIKGIRSEFKMPKSEDPNLLEYQFEWLFANGLLAIIFASGVLFTSLKTRRARLWKYGTGWFRSLIAEYGVPLMVVLWTALSYGVPSKVPEGVPRRLFCPLPWEPASLYHWTVIKDMGKIPFIYILAACLPAMMIAGLYFFDHSVASQMAQQKEYNLQNPSSYHYDIFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLSMLNRQQIRRKMIRNAKECIKLKASNSEIYGRMQAAFIEMDASPSPKELETLAKAVKSVEDSDRKVKFDAEKTIDPYLPVRVNEQRLSNLLQSLLVGLSIFFIPLMKRIPTSVLWGYFAYMAIDSLPGNQFWERLLLLLITPGRRFKVLEGSHLSFVESVPFKVIVSFTLFQFAYFLLCFGITWIPVAGILFPLPFFLLISIREHVLPRFFQPHHLQELDAAEYEEIPAGARHRNRSTVSRTLSNSPLLRFAENETTDSNADENIIEYYDSEVLDEMTTHRGEILKFRNNRKDIIFSSHTVALLT 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10096033 10100966 + Sed0013509.2 Sed03g1589 707076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1589 670 PANTHER ANION EXCHANGE PROTEIN 4 641 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed03g1589 670 Pfam HCO3- transporter integral membrane domain 199 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed03g1589 670 Pfam HCO3- transporter integral membrane domain 4 178 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed03g1589 670 Pfam HCO3- transporter integral membrane domain 445 587 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed03g1589 670 Gene3D Helical hairpin bin 15 57 - -
Sed03g1589 670 FunFam probable boron transporter 2 15 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1351 Sed-Chr1:10065235 Sed03g1589 Sed-Chr3:10096033 4.50E-241 dispersed
Sed01g1352 Sed-Chr1:10065235 Sed03g1589 Sed-Chr3:10096033 2.10E-256 dispersed
Sed03g1589 Sed-Chr3:10096033 Sed05g1467 Sed-Chr5:28389525 4.50E-258 dispersed
Sed03g1589 Sed-Chr3:10096033 Sed03g1590 Sed-Chr3:10096502 0.00E+00 tandem
Sed01g1348 Sed-Chr1:10064014 Sed03g1589 Sed-Chr3:10096033 4.30E-306 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1589 K24194 - csv:101220188 1034.25