Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1593 ATGTTACACCATCCTTGGGATTTAGTGCAGGCAGAGCAAAGTAACCCGACGAAAATGGAGGAGAAGGTTTTCAAAAAGCTGCAAGGCGAACCATGGAGAGTCCTCGAGTTCTACAGCGGCATCGGCGGCATGAGATACTCGCTGCTGAGTGCTGGCATCGATGCGAACGTGGTGCAAGCTTTTGATATCAACGATGTAGCCAACGACGTTTACCAGCATAATTTCGGCCATCGTCCGTATCAGGGTAATATCGAAAGTCTGACTGCTGCTGATATCGACAGCTACCAAGCTGATGTTTGGCTTCTTTCACCCCCTTGCCAACCATACACTAGACAAGGTTTACAAAAGCATTCTGGCGATGCTCGGGCACTTTCATTTCTCAAAATTCTTGAGTTGATGCTGCAAGCATCAAGGCCACCGGTAATGTTATTCATGGAAAACGTTGTTGGATTTGAGACATCTGACACACATACAAAAATGATTGAAATATTGGAAAAGGCTGACTTTTCTAGACTGGAGTTTATCTTGAGCCCCATGCAATTTGGTGTCCCATATTCCAGACCACGATACTTCTGCCTGGCTAAAAGGAGGCCTTTATCCTTTAAAAGGAAAATATACAATAATCAACTTCATCGGTCTCCAAGCCCATTACTTGAGAATGATGCTGGCTTAGAAATCATTGAAAACCATCAAGCGACTTCTGATAAGTTGCTGCTCTCTTGTGAGCCAATATGTAGGTTTCTTGACAAATCCAGCCATCACAAGGAGTTTAGTTTTTATGATACCAGTAGTATTCTTAGAGAGGGTGCGTTGGAGAAAACCAAGGATTCGGATGAGCAAGGCATCGGATCTTTTGATCAGTATGTTGTCCCATCCAGTTTGATAGACAGATGGGGCAGTGCTATGGATATTGTATATCCTGATTCAAGGCGATGCTGCTGTTTTACAAAAAGCTACTACCGATATGTGAAGGGAACTGGCTCGCTTTTGGCACCTTTTGAGGCGGAAAAGATGGGAAAGGCTCATTCTCTGAAAGAGCAGAAGCTCAGATATTTTACTCCAAGAGAGGTCGCAAACTTGCATTCCTTTCCGGCAGATTTTCAATTCCCACAGCATATCGGCCTCAGACAACGGTACGTATCTTCATTTTCCATCCTCACTCTTCAGTAA 1170 44.1 MLHHPWDLVQAEQSNPTKMEEKVFKKLQGEPWRVLEFYSGIGGMRYSLLSAGIDANVVQAFDINDVANDVYQHNFGHRPYQGNIESLTAADIDSYQADVWLLSPPCQPYTRQGLQKHSGDARALSFLKILELMLQASRPPVMLFMENVVGFETSDTHTKMIEILEKADFSRLEFILSPMQFGVPYSRPRYFCLAKRRPLSFKRKIYNNQLHRSPSPLLENDAGLEIIENHQATSDKLLLSCEPICRFLDKSSHHKEFSFYDTSSILREGALEKTKDSDEQGIGSFDQYVVPSSLIDRWGSAMDIVYPDSRRCCCFTKSYYRYVKGTGSLLAPFEAEKMGKAHSLKEQKLRYFTPREVANLHSFPADFQFPQHIGLRQRYVSSFSILTLQ 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10118639 10125341 - Sed0010731.1 Sed03g1593 707080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1593 389 Gene3D Vaccinia Virus protein VP39 24 221 IPR029063 -
Sed03g1593 389 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 32 389 IPR001525 GO:0008168(InterPro)
Sed03g1593 389 PRINTS Cytosine-specific DNA methyltransferase signature 33 49 IPR001525 GO:0008168(InterPro)
Sed03g1593 389 PRINTS Cytosine-specific DNA methyltransferase signature 139 153 IPR001525 GO:0008168(InterPro)
Sed03g1593 389 PRINTS Cytosine-specific DNA methyltransferase signature 182 195 IPR001525 GO:0008168(InterPro)
Sed03g1593 389 Pfam C-5 cytosine-specific DNA methylase 33 372 IPR001525 GO:0008168(InterPro)
Sed03g1593 389 Gene3D DNA Methylase, subunit A, domain 2 267 381 - -
Sed03g1593 389 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 30 379 IPR050750 GO:0005634(PANTHER)
Sed03g1593 389 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 31 379 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1593 K15336 - - csv:101219472 622.468
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g443 Blo01g01376 . Bda01g00733 . . Bpe02g00573 . . Cmo05g00414 Cmo12g00274 . Cma05g00403 . Car12g00304 Sed03g1593 Cpe07g00283 . Bhi04g01000 Tan02g2700 Cmetu03g2157 . Hepe10g0271 . Lcy13g1761 . . . . . . . Cone4ag1807 Cone7ag1715 . . . . . Cme03g01643 . . . . . . . . . . . . . . Car05g00337 Cpe11g00343 . . . . . . . . Cla08g01311 Cam08g1771 Cec08g1352 Cco08g1473 Clacu08g1467 . Cre08g1254 Lsi08g01175 . Chy03g01145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008501 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35