Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1613 ATGGTAATGGTTTACACGGAAACGCGGGCCTGGAATTGTTCCAACAAGGAATTGAATTCGCTGTCACTGACCCATTCCATTGCACGCCCTCTCTTTGTTTCTTCGTTTATTCCTTTCATTTATTATTCCACACAAATTATTACCAAAGAAAAAAGAAAAGGGAAAGAAATGGCGAAGACGAAGAAATTCCAGGTGAAATTAGAAAAGTTGAAGCTTCATGGATTTGGCAAAGAAAACGAAACAATCTCCATCGAAATCAAATGGAAAGGCCCCCAAAAACAATACTCCATTTTATCCGTTCCGTTCTATCCCAAATCTAAATCCAAACTCCAAACAAATCGCACCGCCCCTCGACATGTTCTTCAACGCCAACAATCCATCCACTGGAACGACCAATTCCACACCGTTTGTCATTTCCATTTCTCCGATGACAACAATTCCGTCGCCGGTTGGGACGCCAAATTCTACGTCTTGCTCGAAGAATGCACGAAATCCAAATCCAAATCCATGGTTTTGGGGAAGGCGTCTTTGAATTTAGCGGAGATGATTTTGGCGACGGAGACCAAAATGGAGAGGAATGTTCCGATCACGTTGAAAGATGCTGCGGGTCTGCACCAAGCTACCCTTTCTGTAGTTGTGAATTTCGTGGAGCTCCGAGACGAACCGGACTCGGCCGGAATCGGACAGGACGCGAATCGGAACGACAAGGAGGGGATTTTGAAAGCGTTTAAAGATCTGACGAGTTTCAAGAAGAAGAACAGGGAGAAAGGGAAAGGATCAGTTTCATCCGACCGTGAAAACAGGGCTTTAGGGGATCGGACGACGGAGAAGAAGCGGCGCCTGAGTTTGAGTTTCAGACATTCGAAAGGGAAGGTGGAGCCGTGTGCGGCGGCGGTCAACGACGGAGGTGCCGTTGACCGACAGGAACACGACAATGAACCCTCCGTGTCCCCTGCGTTGACCGATTCCCAAACGAATAAATCAGAAACCAGAGAGTTTTCTTTGGAAACAGATGGCCAAAACAAAGAAGAAACCACTGAAGGAAGATGGGAAAGAAGAGAAATAGTAAGCAGAGATGGAAAAGCAAAGCTAAAAACAGAGGTGTTCTTTGGCTCTTTAGACCAGCGGAGCGAGCAGGCTGGTGGCGAGAGTGCCTGCACGCCGATAGTCGCCGTGATCGCACACTGGCTACACTCGAATTACGGTGCCTTGCCCACACAATCCGAGCTTGACAGCCTCATAATGGAAGGTTCCTCAGAATGGCAAAAGCTTTGCAGCAACGATTGCTACTACAACTCCTTTCCCAACAAACATTTCGACCTCGAGACCGTCATGGAAGCCGACATCCGGCCAATCACAGTCTCACCGGAACATTCCTTTGTGGGGTTCTTTAGCCCAGAGAAATTCAACTGCTTGACAGAAGCAATGTCGTTCGAGCAAATATGGAAGGAGGTCAATGCCGTAACGCCTCCAAATTCCGAGCCAAGAATATACATTGTGAGTTGGAATGATCATTTCTTCGCGCTAAAGATGGAAGAAGACACTTGCTACATCGTTGATTCGCTGGGGGAGAGGCTGTTCGAGGGGTGTAATCAAGCCTACATCTTGAAGTTCAACAGCTCGAGTTTGATGTTAGAGAGCAAAGAGAAAGGAGAGGATGGGGGATTGGTCTGCAAGGGAAAAGAATGTTGCAGAGAATTTTTTGAAAGGTTTCTTGCTGCTATAACCATTGAAGAGCTGGAAGAAGAGCAAAAGAAGTTGAGTGGCAGTAATTTTATACCCCATCAGAGGTTGCAGATTGACTTCCATTTTAGTAGCCCTGTTGCTTCATCCTCATCAACTTCCCCTTGCTCTCTTTTCTCTAATCAAGACTCTCCATAA 1881 46.57 MVMVYTETRAWNCSNKELNSLSLTHSIARPLFVSSFIPFIYYSTQIITKEKRKGKEMAKTKKFQVKLEKLKLHGFGKENETISIEIKWKGPQKQYSILSVPFYPKSKSKLQTNRTAPRHVLQRQQSIHWNDQFHTVCHFHFSDDNNSVAGWDAKFYVLLEECTKSKSKSMVLGKASLNLAEMILATETKMERNVPITLKDAAGLHQATLSVVVNFVELRDEPDSAGIGQDANRNDKEGILKAFKDLTSFKKKNREKGKGSVSSDRENRALGDRTTEKKRRLSLSFRHSKGKVEPCAAAVNDGGAVDRQEHDNEPSVSPALTDSQTNKSETREFSLETDGQNKEETTEGRWERREIVSRDGKAKLKTEVFFGSLDQRSEQAGGESACTPIVAVIAHWLHSNYGALPTQSELDSLIMEGSSEWQKLCSNDCYYNSFPNKHFDLETVMEADIRPITVSPEHSFVGFFSPEKFNCLTEAMSFEQIWKEVNAVTPPNSEPRIYIVSWNDHFFALKMEEDTCYIVDSLGERLFEGCNQAYILKFNSSSLMLESKEKGEDGGLVCKGKECCREFFERFLAAITIEELEEEQKKLSGSNFIPHQRLQIDFHFSSPVASSSSTSPCSLFSNQDSP 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10262170 10265273 + Sed0014687.1 Sed03g1613 707100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1613 626 ProSiteProfiles C2 NT-type domain profile. 53 217 IPR019448 -
Sed03g1613 626 MobiDBLite consensus disorder prediction 305 353 - -
Sed03g1613 626 MobiDBLite consensus disorder prediction 314 328 - -
Sed03g1613 626 PANTHER C2 NT-TYPE DOMAIN-CONTAINING PROTEIN 254 614 - -
Sed03g1613 626 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 62 223 IPR019448 -
Sed03g1613 626 MobiDBLite consensus disorder prediction 251 287 - -
Sed03g1613 626 MobiDBLite consensus disorder prediction 329 353 - -
Sed03g1613 626 MobiDBLite consensus disorder prediction 251 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1613 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1613 Sed-Chr3:10262170 Sed07g2168 Sed-Chr7:37208890 9.20E-64 dispersed
Sed03g1613 Sed-Chr3:10262170 Sed12g1330 Sed-Chr12:10123888 3.20E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g486 . . . . . . . . Cmo05g00382 . . Cma05g00381 . . Sed03g1613 . . Bhi04g00946 Tan02g2726 Cmetu03g0210 . Hepe10g0247 . Lcy13g1793 . . . . . . . . . . . . . . Cme03g01613 Blo17g00020 . . Bda13g01261 . . . . . . . . . . Car05g00324 Cpe11g00326 . . . . . . . . Cla08g01337 Cam08g1799 Cec08g1378 Cco08g1506 Clacu08g1493 . Cre08g1280 Lsi08g01208 . Chy03g01117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013221 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27