Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1630 ATGGCTTTCCGGAATCAACTCTCTCGGGATCTTCCTCTCCATTACGCGAACCAGCAGGAGCGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTTTCCGACCACTCTCCGGCCGGTGATGCTTCGAAGTCTGAGCTTCCGCTTCAGAGGACTCCGAATTGGTTGAATGGTGCGCTGCTTCGGGATCAAACCCCTAATTCTCACTATTCTGGTGAGACAACGACGACGGCTGCAGATAGCGTCGACACCGATTTCCTCAACCTTCATACGACCGGTTCTAATTCCGGTCAATGGCTTTCTCGCCCGATCCTCCATCGCGATGACGTCGCCGGTACTTATTCGCGTGAATCGGATGATTTGAAGAACGACAGCGGCGGCGGCGGCGGCGGAGTGAACGACAGTGACGATGTGGCTGTTGAGAGCGATGGTGATGATGGTGGAGAGGCGGTACCGAATTGGCAGAATGCGCGGTGTAAGGCTGAAATTCTGGCGCATCCTCTATACGAGCAGCTGCTCTCTGCTCACGTTGCCTGCCTCCGGATCGCGACGCCGGTGGACCAGTTGCAGAGGATAGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTAGGGCACGGTTCTCCGCCCATTGTCAGTAACGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTCTTGTTACTTTGTTCTTTTAAAGAGCAACTTCAGCAACATGTCCGTGTCCATGCAATGGAAGCTGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCTGGTGAAAGTACGGGTGTTACAATGTCTGATGATGACGAAGATCCGATAGATAGCGATGCGAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCTACGGAAAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAACATGAACTTAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATCTTAAGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACCGAGGAAGATAAAGCAAAATTGGTTCAGGAAACTGGCCTACAACTGAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAACTGGCACACCAATTCTTCAACCCCAACACCCTTGAAGACTAAACGCACAAGGTGA 1278 49.14 MAFRNQLSRDLPLHYANQQERPLSDNTLRSILSDQLSDHSPAGDASKSELPLQRTPNWLNGALLRDQTPNSHYSGETTTTAADSVDTDFLNLHTTGSNSGQWLSRPILHRDDVAGTYSRESDDLKNDSGGGGGGVNDSDDVAVESDGDDGGEAVPNWQNARCKAEILAHPLYEQLLSAHVACLRIATPVDQLQRIDSQLSQSQNVAAKYSSLGHGSPPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGESTGVTMSDDDEDPIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNSSTPTPLKTKRTR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10375075 10380035 - Sed0018968.2 Sed03g1630 707117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1630 425 Pfam ELK domain 328 349 IPR005539 GO:0003677(InterPro)
Sed03g1630 425 MobiDBLite consensus disorder prediction 35 54 - -
Sed03g1630 425 ProSiteProfiles ELK domain profile. 328 348 IPR005539 GO:0003677(InterPro)
Sed03g1630 425 SMART KNOX2_2 215 271 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1630 425 FunFam homeobox protein knotted-1-like 3 isoform X1 349 410 - -
Sed03g1630 425 CDD homeodomain 351 412 IPR001356 GO:0003677(InterPro)
Sed03g1630 425 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 410 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1630 425 Gene3D - 347 417 - -
Sed03g1630 425 MobiDBLite consensus disorder prediction 118 154 - -
Sed03g1630 425 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g1630 425 ProSiteProfiles 'Homeobox' domain profile. 348 411 IPR001356 GO:0003677(InterPro)
Sed03g1630 425 Pfam KNOX1 domain 163 203 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1630 425 MobiDBLite consensus disorder prediction 405 425 - -
Sed03g1630 425 SMART HOX_1 350 415 IPR001356 GO:0003677(InterPro)
Sed03g1630 425 SUPERFAMILY Homeodomain-like 350 415 IPR009057 -
Sed03g1630 425 SMART KNOX1_2 160 204 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1630 425 MobiDBLite consensus disorder prediction 1 25 - -
Sed03g1630 425 SMART ELK_2 328 349 IPR005539 GO:0003677(InterPro)
Sed03g1630 425 Pfam KNOX2 domain 221 270 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1630 Sed-Chr3:10375075 Sed03g1632 Sed-Chr3:10375588 7.10E-217 dispersed
Sed03g1630 Sed-Chr3:10375075 Sed03g1631 Sed-Chr3:10375588 7.10E-217 tandem
Sed11g1159 Sed-Chr11:27543477 Sed03g1630 Sed-Chr3:10375075 2.40E-199 wgd
Sed13g1994 Sed-Chr13:24792996 Sed03g1630 Sed-Chr3:10375075 8.60E-160 wgd
Sed03g1630 Sed-Chr3:10375075 Sed05g1718 Sed-Chr5:30987398 4.40E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37875 PF03791 KNOX2 3.30E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1630 - - - 0.0