Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1630 | ATGGCTTTCCGGAATCAACTCTCTCGGGATCTTCCTCTCCATTACGCGAACCAGCAGGAGCGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTTTCCGACCACTCTCCGGCCGGTGATGCTTCGAAGTCTGAGCTTCCGCTTCAGAGGACTCCGAATTGGTTGAATGGTGCGCTGCTTCGGGATCAAACCCCTAATTCTCACTATTCTGGTGAGACAACGACGACGGCTGCAGATAGCGTCGACACCGATTTCCTCAACCTTCATACGACCGGTTCTAATTCCGGTCAATGGCTTTCTCGCCCGATCCTCCATCGCGATGACGTCGCCGGTACTTATTCGCGTGAATCGGATGATTTGAAGAACGACAGCGGCGGCGGCGGCGGCGGAGTGAACGACAGTGACGATGTGGCTGTTGAGAGCGATGGTGATGATGGTGGAGAGGCGGTACCGAATTGGCAGAATGCGCGGTGTAAGGCTGAAATTCTGGCGCATCCTCTATACGAGCAGCTGCTCTCTGCTCACGTTGCCTGCCTCCGGATCGCGACGCCGGTGGACCAGTTGCAGAGGATAGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTAGGGCACGGTTCTCCGCCCATTGTCAGTAACGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTCTTGTTACTTTGTTCTTTTAAAGAGCAACTTCAGCAACATGTCCGTGTCCATGCAATGGAAGCTGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCTGGTGAAAGTACGGGTGTTACAATGTCTGATGATGACGAAGATCCGATAGATAGCGATGCGAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCTACGGAAAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAACATGAACTTAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATCTTAAGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACCGAGGAAGATAAAGCAAAATTGGTTCAGGAAACTGGCCTACAACTGAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAACTGGCACACCAATTCTTCAACCCCAACACCCTTGAAGACTAAACGCACAAGGTGA | 1278 | 49.14 | MAFRNQLSRDLPLHYANQQERPLSDNTLRSILSDQLSDHSPAGDASKSELPLQRTPNWLNGALLRDQTPNSHYSGETTTTAADSVDTDFLNLHTTGSNSGQWLSRPILHRDDVAGTYSRESDDLKNDSGGGGGGVNDSDDVAVESDGDDGGEAVPNWQNARCKAEILAHPLYEQLLSAHVACLRIATPVDQLQRIDSQLSQSQNVAAKYSSLGHGSPPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGESTGVTMSDDDEDPIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNSSTPTPLKTKRTR | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10375075 | 10380035 | - | Sed0018968.2 | Sed03g1630 | 707117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1630 | 425 | Pfam | ELK domain | 328 | 349 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | MobiDBLite | consensus disorder prediction | 35 | 54 | - | - | |
Sed03g1630 | 425 | ProSiteProfiles | ELK domain profile. | 328 | 348 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | SMART | KNOX2_2 | 215 | 271 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1630 | 425 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 349 | 410 | - | - | |
Sed03g1630 | 425 | CDD | homeodomain | 351 | 412 | IPR001356 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 160 | 410 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed03g1630 | 425 | Gene3D | - | 347 | 417 | - | - | |
Sed03g1630 | 425 | MobiDBLite | consensus disorder prediction | 118 | 154 | - | - | |
Sed03g1630 | 425 | Pfam | Homeobox KN domain | 368 | 407 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g1630 | 425 | ProSiteProfiles | 'Homeobox' domain profile. | 348 | 411 | IPR001356 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | Pfam | KNOX1 domain | 163 | 203 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1630 | 425 | MobiDBLite | consensus disorder prediction | 405 | 425 | - | - | |
Sed03g1630 | 425 | SMART | HOX_1 | 350 | 415 | IPR001356 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | SUPERFAMILY | Homeodomain-like | 350 | 415 | IPR009057 | - | |
Sed03g1630 | 425 | SMART | KNOX1_2 | 160 | 204 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed03g1630 | 425 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed03g1630 | 425 | SMART | ELK_2 | 328 | 349 | IPR005539 | GO:0003677(InterPro) | |
Sed03g1630 | 425 | Pfam | KNOX2 domain | 221 | 270 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1630 | Sed-Chr3:10375075 | Sed03g1632 | Sed-Chr3:10375588 | 7.10E-217 | dispersed | |
Sed03g1630 | Sed-Chr3:10375075 | Sed03g1631 | Sed-Chr3:10375588 | 7.10E-217 | tandem | |
Sed11g1159 | Sed-Chr11:27543477 | Sed03g1630 | Sed-Chr3:10375075 | 2.40E-199 | wgd | |
Sed13g1994 | Sed-Chr13:24792996 | Sed03g1630 | Sed-Chr3:10375075 | 8.60E-160 | wgd | |
Sed03g1630 | Sed-Chr3:10375075 | Sed05g1718 | Sed-Chr5:30987398 | 4.40E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37875 | PF03791 | KNOX2 | 3.30E-19 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1630 | - | - | - | 0.0 |