Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1631 ATGGCTTTCCGGAATCAACTCTCTCGGGATCTTCCTCTCCATTACGCGAACCAGCAGGAGCGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTTTCCGACCACTCTCCGGCCGGTGATGCTTCGAAGTCTGAGCTTCCGCTTCAGAGGACTCCGAATTGGTTGAATGGTGCGCTGCTTCGGGATCAAACCCCTAATTCTCACTATTCTGGTGAGACAACGACGACGGCTGCAGATAGCGTCGACACCGATTTCCTCAACCTTCATACGACCGGTTCTAATTCCGGTCAATGGCTTTCTCGCCCGATCCTCCATCGCGATGACGTCGCCGGTACTTATTCGCGTGAATCGGATGATTTGAAGAACGACAGCGGCGGCGGCGGCGGCGGAGTGAACGACAGTGACGATGTGGCTGTTGAGAGCGATGGTGATGATGGTGGAGAGGCGGTACCGAATTGGCAGAATGCGCGGTGTAAGGCTGAAATTCTGGCGCATCCTCTATACGAGCAGCTGCTCTCTGCTCACGTTGCCTGCCTCCGGATCGCGACGCCGGTGGACCAGTTGCAGAGGATAGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTAGGGCACGGTTCTCCGCCCATTGTCAGTAACGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTCTTGTTACTTTGTTCTTTTAAAGAGCAACTTCAGCAACATGTCCGTGTCCATGCAATGGAAGCTGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCTGGTGAAAGTACGGGTGTTACAATGTCTGATGATGACGAAGATCCGATAGATAGCGATGCGAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCTACGGAAAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAACATGAACTTAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATCTTAAGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACCGTGAGTATTTGCTGA 1152 49.91 MAFRNQLSRDLPLHYANQQERPLSDNTLRSILSDQLSDHSPAGDASKSELPLQRTPNWLNGALLRDQTPNSHYSGETTTTAADSVDTDFLNLHTTGSNSGQWLSRPILHRDDVAGTYSRESDDLKNDSGGGGGGVNDSDDVAVESDGDDGGEAVPNWQNARCKAEILAHPLYEQLLSAHVACLRIATPVDQLQRIDSQLSQSQNVAAKYSSLGHGSPPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGESTGVTMSDDDEDPIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTVSIC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10375588 10380035 - Sed0018968.1 Sed03g1631 707118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1631 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 158 379 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g1631 383 Pfam KNOX2 domain 221 270 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1631 383 MobiDBLite consensus disorder prediction 118 154 - -
Sed03g1631 383 MobiDBLite consensus disorder prediction 35 54 - -
Sed03g1631 383 ProSiteProfiles ELK domain profile. 328 348 IPR005539 GO:0003677(InterPro)
Sed03g1631 383 Gene3D - 322 381 - -
Sed03g1631 383 SMART KNOX2_2 215 271 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1631 383 SMART KNOX1_2 160 204 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1631 383 Pfam KNOX1 domain 163 203 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed03g1631 383 MobiDBLite consensus disorder prediction 1 25 - -
Sed03g1631 383 SMART ELK_2 328 349 IPR005539 GO:0003677(InterPro)
Sed03g1631 383 Pfam ELK domain 328 349 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1631 Sed-Chr3:10375588 Sed11g1159 Sed-Chr11:27543477 3.80E-177 dispersed
Sed03g1630 Sed-Chr3:10375075 Sed03g1631 Sed-Chr3:10375588 7.10E-217 tandem
Sed03g1631 Sed-Chr3:10375588 Sed03g1632 Sed-Chr3:10375588 5.20E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1631 - - - 0.0