Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1636 ATGGCCAGACCTCAACAGCGTTATCGAGGCGTTCGCCAAAGGCATTGGGGCTCTTGGGTTTCCGAAATTCGTCATCCGTTATTGAAAACAAGAATTTGGTTGGGCACTTTCGAAACCGCTGAAGATGCGGCGCGAGCCTACGACGAAGCTGCTCGGCTAATGTGCGGCCATAGAGCAAGAACCAATTTCCCTTTCAACCCAAACGATTCAAATTCATCATCTACTTCTAAACTCCTCTCTCCAAATTTGACCGCAAAACTTCACCGTTGCTATATGGCATCTCTCCATCTGACGAACCAATCGTTGCAGAAACCCGCCGCGGTCGGGAAAAAACGTGGTGCGACGGTCGAGACCGCCGAGAATTGGGGGGTGAAAAAGGTTCCAACAGAGGCCACTGCCCATCAACCATTTGAGGCTTTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGATCTGTTGAGCTTTGTTCTTCTGTGGTGAATTAA 501 48.1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGHRARTNFPFNPNDSNSSSTSKLLSPNLTAKLHRCYMASLHLTNQSLQKPAAVGKKRGATVETAENWGVKKVPTEATAHQPFEALEEDHIEQMIEELIHYGSVELCSSVVN 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10430156 10431110 + Sed0027877.1 Sed03g1636 707123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1636 166 Pfam AP2 domain 7 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 103 IPR050913 -
Sed03g1636 166 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Sed03g1636 166 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g1636 166 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1636 Sed-Chr3:10430156 Sed05g1411 Sed-Chr5:27503087 1.70E-36 dispersed
Sed11g1154 Sed-Chr11:27466876 Sed03g1636 Sed-Chr3:10430156 1.40E-49 wgd
Sed03g1636 Sed-Chr3:10430156 Sed07g0743 Sed-Chr7:5549713 1.70E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37876 PF00847 AP2 3.70E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1636 - - - 0.0